Click here to switch to the map view.

The map label for this gene is prfB

Identifier: 218906362

GI number: 218906362

Start: 4968429

End: 4969452

Strand: Direct

Name: prfB

Synonym: BCAH820_5276

Alternate gene names: NA

Gene position: 4968429-4969452 (Clockwise)

Preceding gene: 218906353

Following gene: 218906365

Centisome position: 93.7

GC content: 40.23

Gene sequence:

>1144_bases
TTGTTTTCATACGAAAGTAACAGCAATTACATAGAGGTGAAGGAAATGGAATTAGTAGAAATTAGACAGGAATTAGAGAA
AATGGCTAAGAGATTAGCGGCTTTTAGGGGGTCTCTTTGACCTCCCTACTAAGGAGAAACAAATTGCAGAATTAGAAGAG
AAAATGATGGGCGCAGGATTTTGGGATGACCAACAAGGCGCACAAGCTGTAATTAATGAAGCGAATGCACTGAAAGATAT
GGTTGGAAAGTTCCGTCAGCTAGATGAGACGTTCGAGAATCTAGAAATTACGCATGAGCTTTTAAAAGAAGAGTATGATG
AAGATTTACATGAGGAGCTTGAATCAGAAGTAAAAGGTTTAATTCAAGAAATGAATGAGTATGAACTTCAGTTACTACTT
AGCGATCCTTATGATAAAAATAACGCGATTTTAGAATTACACCCAGGTGCTGGTGGAACAGAGTCACAAGACTGGGGCTC
TATGTTACTACGTATGTACACACGTTGGGCTGAAAAACGTGGATTTAAAGTAGAAACAGTTGACTACTTACCAGGTGATG
AAGCTGGTATTAAGAGTGTTACGTTATTAATTAAAGGTCATAACGCTTACGGTTACTTAAAGGCAGAGAAAGGTGTACAT
CGTCTTGTACGTATTTCTCCATTCGATTCTTCAGGCCGTCGCCATACATCGTTCGTATCTTGTGAAGTTGTACCTGAGTT
CAATGATGAAGTTGAAATTGAAGTGCGTACAGAAGACTTGAAAATTGATACGTATCGTGCAAGTGGAGCTGGTGGACAGC
ACGTTAATACGACAGATTCAGCAGTTCGTATTACGCATACGCCGACAAATACGGTTGTAACGTGTCAGTCAGAGCGTTCT
CAAATTAAAAACCGTGAGCATGCGATGAAGATGTTAAAAGCGAAATTATATCAAAAGAAATTAGAAGAGCAACAAGCGGA
GTTAGATGAAATTCGCGGAGAACAAAAGGAAATTGGATGGGGTAGTCAAATCCGTTCTTACGTATTCCACCCGTATTCTC
TTGTGAAAGACCACCGTACAAATACAGAGGTCGGTAACGTGCAAGCAGTTATGGATGGAGAAATTGACCCATTCATTGAT
GCTTACTTACGTTCTCGCATCTAA

Upstream 100 bases:

>100_bases
ATACAGGGCGCTAGCTTTGGCTACTTTGCAAACTTTTACATCAAAAATGTATAATTAAGAAGGATTAAACTCTCTCCGTC
ATAAGTGGAGAGAGTTTCCC

Downstream 100 bases:

>100_bases
TGAGAAAAAGGCCAACAAAATTGTTGGCGCATGTTGAGGACAATAGAGGATATACAGAGTTTGATTTTATTTCTATAGAT
GAAGTAAAGAGGAAGAGAAG

Product: peptide chain release factor 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>380_residues
MFSYESNSNYIEVKEMELVEIRQELEKMAKRLAAFRGSLCLPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDM
VGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGS
MLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVVPEF
NDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAE
LDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSRI

Sequences:

>Translated_341_residues
LDART*VSINEWVNFSIHNCLHVTDLCICTVVFHKRIRVEYVRTDLTTPSNFLLFSANFI*LRLLLF*FLLI*FRF*HLH
RMLTVFNLRTL*LTRYNRICRRMRNTNC*ICRINVLSTSSTCTIRINFQVFCTHFNFNFIIELRYNFTRYERCMATA*RI
EWRNTYKTMYTFLCL*VTVSVMTFN**RNTLNTSFITW*VVNCFYFKSTFFSPTCVHT**HRAPVL*LCSTSTWV*F*NR
VIFIIRIAK**LKFILIHFLN*TFYF*FKLLM*IFIILFF*KLMRNF*ILERLI*LTELSNHIFQCIRFINYSLCALLVI
PKSCAHHFLF*FCNLFLLSRE
>Mature_341_residues
LDART*VSINEWVNFSIHNCLHVTDLCICTVVFHKRIRVEYVRTDLTTPSNFLLFSANFI*LRLLLF*FLLI*FRF*HLH
RMLTVFNLRTL*LTRYNRICRRMRNTNC*ICRINVLSTSSTCTIRINFQVFCTHFNFNFIIELRYNFTRYERCMATA*RI
EWRNTYKTMYTFLCL*VTVSVMTFN**RNTLNTSFITW*VVNCFYFKSTFFSPTCVHT**HRAPVL*LCSTSTWV*F*NR
VIFIIRIAK**LKFILIHFLN*TFYF*FKLLM*IFIILFF*KLMRNF*ILERLI*LTELSNHIFQCIRFINYSLCALLVI
PKSCAHHFLF*FCNLFLLSRE

Specific function: Unknown

COG id: COG1186

COG function: function code J; Protein chain release factor B

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37556; Mature: 37556

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
LDARTVSINEWVNFSIHNCLHVTDLCICTVVFHKRIRVEYVRTDLTTPSNFLLFSANFIL
CCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEHHHHHH
RLLLFFLLIFRFHLHRMLTVFNLRTLLTRYNRICRRMRNTNCICRINVLSTSSTCTIRIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEE
FQVFCTHFNFNFIIELRYNFTRYERCMATARIEWRNTYKTMYTFLCLVTVSVMTFNRNTL
EEEEEEEECEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NTSFITWVVNCFYFKSTFFSPTCVHTHRAPVLLCSTSTWVFNRVIFIIRIAKLKFILIHF
CHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
LNTFYFFKLLMIFIILFFKLMRNFILERLILTELSNHIFQCIRFINYSLCALLVIPKSCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHFLFFCNLFLLSRE
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA