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The map label for this gene is ybfM [H]

Identifier: 218906229

GI number: 218906229

Start: 4838513

End: 4839127

Strand: Reverse

Name: ybfM [H]

Synonym: BCAH820_5141

Alternate gene names: 218906229

Gene position: 4839127-4838513 (Counterclockwise)

Preceding gene: 218906235

Following gene: 218906227

Centisome position: 91.26

GC content: 34.96

Gene sequence:

>615_bases
ATGGAATGGATTCATGAATTATTTCAGCAATACGGGTACTATGTTGTACTTGTCGGTTTGCTGTTAGAATATATCGCACT
TCCGTTTCCGGGAGAGCCAACGTTAGCATATGCGGGATTTTTAGCACATAAAGGTGATTTAAGTTTACCGATTTTAATCA
TTCTATCCTTTATTGGGACAAGTGTAGGAATGACGATTCAATACTTTTTAGGAAATAAATTAGGTATGCCCTTTATTCAA
AAGTATGGGAAATACGTATTTTTAACACAAAGAAAAATCGACTTAACAAGAATGTGGTTTGATAAGTATGGATATTTCCT
AATCTTTATCGGTTTCTTTATTCCTGGTGTACGTCACTTTACAGGATACTTTGCAGGAATTATTAACTTACCATTCCGCC
GCTTTGCAATTACAATTTATTCAGGTGCTCTATTTTGGGTATCATTCTTCTTAATCGGTGGTTACTGGTTAGGTGGCAAT
TTACATGATATTTTTGGAGCGCTAGAAGGTCATATCGGTAAAATCATTTTTGGAGTGATTGTGATTGTAGCAATTACGTT
AGGAGTTCGTTTCCGTAAACAGTTAAAACGAGCATTATTACAAAACGCAAGTTAA

Upstream 100 bases:

>100_bases
CAAAAATGTAATAAAAATGTAAGCTATTGTGATAGTTATTTCGACAATTTTTTTATACAATATTAGTAAGATGTTGCACG
TGATTGAAAGGAGAGATGAC

Downstream 100 bases:

>100_bases
GATGGAATCCATTCTATGTCAGAATTTAGGAAGGCAGTGCAAAAGCACTGCCTTTTTTATTTTATGTTCCAATCGATTTT
TAACTTTCCTTTTGATTGAT

Product: dedA protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGFLAHKGDLSLPILIILSFIGTSVGMTIQYFLGNKLGMPFIQ
KYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHFTGYFAGIINLPFRRFAITIYSGALFWVSFFLIGGYWLGGN
LHDIFGALEGHIGKIIFGVIVIVAITLGVRFRKQLKRALLQNAS

Sequences:

>Translated_204_residues
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGFLAHKGDLSLPILIILSFIGTSVGMTIQYFLGNKLGMPFIQ
KYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHFTGYFAGIINLPFRRFAITIYSGALFWVSFFLIGGYWLGGN
LHDIFGALEGHIGKIIFGVIVIVAITLGVRFRKQLKRALLQNAS
>Mature_204_residues
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGFLAHKGDLSLPILIILSFIGTSVGMTIQYFLGNKLGMPFIQ
KYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHFTGYFAGIINLPFRRFAITIYSGALFWVSFFLIGGYWLGGN
LHDIFGALEGHIGKIIFGVIVIVAITLGVRFRKQLKRALLQNAS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=185, Percent_Identity=28.6486486486486, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23276; Mature: 23276

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGFLAHKGDLSLPILIILSFIGT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
SVGMTIQYFLGNKLGMPFIQKYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHF
HHHHHHHHHHCCCCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGYFAGIINLPFRRFAITIYSGALFWVSFFLIGGYWLGGNLHDIFGALEGHIGKIIFGVI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VIVAITLGVRFRKQLKRALLQNAS
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEWIHELFQQYGYYVVLVGLLLEYIALPFPGEPTLAYAGFLAHKGDLSLPILIILSFIGT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
SVGMTIQYFLGNKLGMPFIQKYGKYVFLTQRKIDLTRMWFDKYGYFLIFIGFFIPGVRHF
HHHHHHHHHHCCCCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGYFAGIINLPFRRFAITIYSGALFWVSFFLIGGYWLGGNLHDIFGALEGHIGKIIFGVI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VIVAITLGVRFRKQLKRALLQNAS
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]