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The map label for this gene is ydeB [H]

Identifier: 218905945

GI number: 218905945

Start: 4573158

End: 4573652

Strand: Direct

Name: ydeB [H]

Synonym: BCAH820_4833

Alternate gene names: 218905945

Gene position: 4573158-4573652 (Clockwise)

Preceding gene: 218905942

Following gene: 218905953

Centisome position: 86.24

GC content: 34.95

Gene sequence:

>495_bases
ATGGAGGTGGATGATTTGTTTCAAATTGGTGATAAAATCGTTTATCCAATGAACGGCGCAGGAGTCATCGAAGCCATTGA
AGAGAAAGAAATATTAGGAACAATACGTCAATATTGTGTAATACGTATCATTAGTAAAGATATGCAAGTAATGCTTCCGA
TGGATCAATTACAAAAATCAGGTATTCGTTATATCGTAGATAAAGGTACGTTAGATGATATACTTCTTGAATTTCAAAAC
GGGGAATCAGATACATCACTTTCCTGGAAACAAAGATATACAATGAATATGGAAAAAATGAAAAACGGCAATCTGCAAGA
TAGTGCAGAAGTTGTTCGGGATTTACTTCGCCGCAATAAAGAGAGAGCTTTAAATGCGAGCGAAAAACAAATGCTAGATA
ACGCACGAAAGATGATGATTAGTGAAGTTGCACTCGTACAAAATGTTTCTGAACATCAAGCAACAGAATATCTTCAAGAT
ACAATGAATCACTAA

Upstream 100 bases:

>100_bases
AAAGAGCTTTTACTTATTGACTCAAATATAATTATTATGGTATTATATAAAATTTGACATTTTAATTCACTTATGCTATC
ATTAAAGATGGTTACCACAT

Downstream 100 bases:

>100_bases
ATTTAAAATAGCTGGCCGCTATTTTTTTTGTAAAAAAAGGACGAAGAGATAAAACTCTTCGTCCTTTTCTATTACCCACG
TCCAGCTTGAAACGATGGAT

Product: transcriptional regulator, CarD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MEVDDLFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIVDKGTLDDILLEFQN
GESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNASEKQMLDNARKMMISEVALVQNVSEHQATEYLQD
TMNH

Sequences:

>Translated_164_residues
MEVDDLFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIVDKGTLDDILLEFQN
GESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNASEKQMLDNARKMMISEVALVQNVSEHQATEYLQD
TMNH
>Mature_164_residues
MEVDDLFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIVDKGTLDDILLEFQN
GESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNASEKQMLDNARKMMISEVALVQNVSEHQATEYLQD
TMNH

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18933; Mature: 18933

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVDDLFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKS
CCHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
GIRYIVDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNK
CCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH
ERALNASEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMNH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEVDDLFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKS
CCHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
GIRYIVDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNK
CCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH
ERALNASEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMNH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]