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The map label for this gene is rng [H]

Identifier: 218905640

GI number: 218905640

Start: 4282873

End: 4284261

Strand: Reverse

Name: rng [H]

Synonym: BCAH820_4525

Alternate gene names: 218905640

Gene position: 4284261-4282873 (Counterclockwise)

Preceding gene: 218905641

Following gene: 218905639

Centisome position: 80.79

GC content: 35.21

Gene sequence:

>1389_bases
TTGAAAACGTTATATATGAACTACGCTGGATCGGAAAAACGCGTTGCAATTGAAGAGAAGAAGAAAATTGTTGAGTTTTT
ATGGAAACGAAATGAAGAACAAGAGATTGTTGGACATATTTATGTTGGACGTATTGTAAGAACGATTGCTGGAATGAACG
CAGCTTTTGTAAACATCGGTCTAGAAAAACATGCGTATCTTTCGTATGATGATGTACCGTCTGCTTATCGTATACATGAA
GGGCAAGCGGTACTCGTACAAGTTGTAAAAGAGGCAATTGATACGAAAGGGCCGAAATTGACAGCAAATATAGAATTTAC
CGGGAAATATGTCGTTTATATGCCGTATGATGAAATGCGTGCGGTTTCTCGGAAAATAAAAAACAATAAAAGAAGGCAAC
AACTACTCCAAATTGAAGTAGAAGGGACAGGAGGTTATATTTTCCGCTCTGCTTCTGAAAAAGGAGAAATTGAAGAAATA
CAAGCTGAAATGCAAAGGCTACAGCAGTTATATGAAGAGTTAAAAAGAAAAGAGGAACAAGGAAAGGCACCGTTACTACT
TCATCGACCGGCAACTTTTTTAGATCGTGTATTTCAAGAAAATCCAATTGAAACGATTGAAAAAGTAGTTGTAGATACAA
GGAGTATAGTAAAAGAATTAGAAGAAAGAGTCGGTAAAGAGAAAGTATCTTTTTATAACGAAAAATCTTCAATGTTTAAC
CATTTTGGAATAGAGCGTGAAATTGAGAAGGCACTTCAAAAAATTGTGTGGCTTCCAAATGGTGCTTATTTAATTGTGGA
ACAAATGGAGACGATGACTGTAATTGATGTGAATACAGGTAAGTTTACTGGAAAACAGAATTTACAAGATACAGTTCTTC
GTACAAATGAATTGGCGGCTGAAGAGATAGCGCGTCAATTAAGACTGCGTGATATCGGTGGTATGATATTGATTGATTTT
ATTAATATGAAAAGAAGAGAAGATAAAGAAAAGGTAAGAGAATGTCTCGTGGCTGCTATGCAAAATGATCGTACATATAC
AAGGGTACTCGGGTTTACAGAGTTAGGGATTTTAGAGATGACACGCAAACGTAAGAAACATTCTTTACGCGACGTATTAC
TAGAAGAGTGTGCACCGTGCAAAGCGACGGGGTATATAATGTCATATGAAACAATTGCGTATGAGCTAGAGAGAGAGCTA
ATTACATATGGCAATATAGAAGATGAGGCAGTATTAATCTCTGCACCTAAAGAACTGCAAAAACAATTTTTACAAAAAGA
ATTACAAAAAAATATTCCATTTGAAATTTATTTCAAAGATGATATGATCGAAAAGTATGCAATTATCCGTTTTGGAAGTA
AAAAAGAAATTGTAGAACGGAAAAAATAG

Upstream 100 bases:

>100_bases
ACAACTTCATCTGTTGAAGAATTAATCGGTTAGTGTTGACGTTAGCACTAACCTTTTATTATTGTAAAAGCAAAGAAGAT
TATAAAGTGAGGAAAGAATT

Downstream 100 bases:

>100_bases
TTAGTAGAACTTTCATTGACAACCGTCTATGATTCATGATAACATCTTTATGTTATAGTTTATAGCACCTAAACGGCTAT
ATGCTACAACCGCACAAGAC

Product: ribonuclease, Rne/Rng family

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MKTLYMNYAGSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDDVPSAYRIHE
GQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPYDEMRAVSRKIKNNKRRQQLLQIEVEGTGGYIFRSASEKGEIEEI
QAEMQRLQQLYEELKRKEEQGKAPLLLHRPATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSFYNEKSSMFN
HFGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIARQLRLRDIGGMILIDF
INMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYIMSYETIAYELEREL
ITYGNIEDEAVLISAPKELQKQFLQKELQKNIPFEIYFKDDMIEKYAIIRFGSKKEIVERKK

Sequences:

>Translated_462_residues
MKTLYMNYAGSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDDVPSAYRIHE
GQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPYDEMRAVSRKIKNNKRRQQLLQIEVEGTGGYIFRSASEKGEIEEI
QAEMQRLQQLYEELKRKEEQGKAPLLLHRPATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSFYNEKSSMFN
HFGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIARQLRLRDIGGMILIDF
INMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYIMSYETIAYELEREL
ITYGNIEDEAVLISAPKELQKQFLQKELQKNIPFEIYFKDDMIEKYAIIRFGSKKEIVERKK
>Mature_462_residues
MKTLYMNYAGSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDDVPSAYRIHE
GQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPYDEMRAVSRKIKNNKRRQQLLQIEVEGTGGYIFRSASEKGEIEEI
QAEMQRLQQLYEELKRKEEQGKAPLLLHRPATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSFYNEKSSMFN
HFGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIARQLRLRDIGGMILIDF
INMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYIMSYETIAYELEREL
ITYGNIEDEAVLISAPKELQKQFLQKELQKNIPFEIYFKDDMIEKYAIIRFGSKKEIVERKK

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=425, Percent_Identity=34.8235294117647, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1787325, Length=425, Percent_Identity=29.6470588235294, Blast_Score=206, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 53879; Mature: 53879

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLYMNYAGSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG
CCEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
LEKHAYLSYDDVPSAYRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPYDEMR
CCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECEEEEEECHHHHH
AVSRKIKNNKRRQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQ
HHHHHHHCCHHHHEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GKAPLLLHRPATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSFYNEKSSMFN
CCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
HFGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAA
HCCCHHHHHHHHHHHEECCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
EEIARQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEM
HHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHH
TRKRKKHSLRDVLLEECAPCKATGYIMSYETIAYELERELITYGNIEDEAVLISAPKELQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
KQFLQKELQKNIPFEIYFKDDMIEKYAIIRFGSKKEIVERKK
HHHHHHHHHHCCCEEEEECCHHHHHHHHEEECCHHHHHHCCC
>Mature Secondary Structure
MKTLYMNYAGSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG
CCEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
LEKHAYLSYDDVPSAYRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPYDEMR
CCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECEEEEEECHHHHH
AVSRKIKNNKRRQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQ
HHHHHHHCCHHHHEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GKAPLLLHRPATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSFYNEKSSMFN
CCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
HFGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAA
HCCCHHHHHHHHHHHEECCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
EEIARQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEM
HHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHH
TRKRKKHSLRDVLLEECAPCKATGYIMSYETIAYELERELITYGNIEDEAVLISAPKELQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
KQFLQKELQKNIPFEIYFKDDMIEKYAIIRFGSKKEIVERKK
HHHHHHHHHHCCCEEEEECCHHHHHHHHEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]