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The map label for this gene is ykkB [H]

Identifier: 218905560

GI number: 218905560

Start: 4201923

End: 4202429

Strand: Reverse

Name: ykkB [H]

Synonym: BCAH820_4445

Alternate gene names: 218905560

Gene position: 4202429-4201923 (Counterclockwise)

Preceding gene: 218905561

Following gene: 218905559

Centisome position: 79.25

GC content: 37.08

Gene sequence:

>507_bases
ATGTTTCATACAGATCGTTTACAAATTCGCAAATATACAATGGATGATTTACAGTTCTACGCTTCACTATGGGGAAATGA
GAAGGTAATGCGTTATATTGGAAATGGGACGTTAAAAACATATATGCAGTGTAAAAAAAGTTTGGAGGAGTGGGTGATTC
CTAGCTATAAAAACGGTCTCGGTTTATTTGTATTAATTGAAAAGAAAACGGGAATACGAATTGGTCATGCAGGATTAGTG
AAGCAACAAATAGATGGAAAAGAGGAAATTGAAATTGGTTATTGGTTATTACCTCAGTATTGGGGAAAAGGGTATGCGAA
AGAAGCAGCAGCAGCATTTCGAGATTATGGCTTCCAAGCGTTACGAATGAATAAATTAATCTCTCTTATTAATCCGGACC
ACCCCGCCTCAATCTTTGTTGCCAGAAAAACAGGGCTTAGTTATGAGAAAACAACTTCATTTCATGGGATCGATGTTCTC
GTTTATTCTATTAGGCGTGTTGGATGA

Upstream 100 bases:

>100_bases
TATTTGAACGTTAGTTCATTTATAATAGATAGTAACATTTAGTATGGATACAAGACGTGAGCGTGTAATTAAATAAAAAT
TCGTGGGAAGGAGTACAGAA

Downstream 100 bases:

>100_bases
AAAAAGGTAAATTGCATCTTTTGAAGAATGGTATATAAAAATAAAGGGGGGATTACATGTACATTTATCATAATGGACTT
ATTATTCGTGAGGGAACGAA

Product: acetyltransferase, GNAT family

Products: Coenzyme A; H+; N8-Acetylspermidine [C]

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MFHTDRLQIRKYTMDDLQFYASLWGNEKVMRYIGNGTLKTYMQCKKSLEEWVIPSYKNGLGLFVLIEKKTGIRIGHAGLV
KQQIDGKEEIEIGYWLLPQYWGKGYAKEAAAAFRDYGFQALRMNKLISLINPDHPASIFVARKTGLSYEKTTSFHGIDVL
VYSIRRVG

Sequences:

>Translated_168_residues
MFHTDRLQIRKYTMDDLQFYASLWGNEKVMRYIGNGTLKTYMQCKKSLEEWVIPSYKNGLGLFVLIEKKTGIRIGHAGLV
KQQIDGKEEIEIGYWLLPQYWGKGYAKEAAAAFRDYGFQALRMNKLISLINPDHPASIFVARKTGLSYEKTTSFHGIDVL
VYSIRRVG
>Mature_168_residues
MFHTDRLQIRKYTMDDLQFYASLWGNEKVMRYIGNGTLKTYMQCKKSLEEWVIPSYKNGLGLFVLIEKKTGIRIGHAGLV
KQQIDGKEEIEIGYWLLPQYWGKGYAKEAAAAFRDYGFQALRMNKLISLINPDHPASIFVARKTGLSYEKTTSFHGIDVL
VYSIRRVG

Specific function: Regulates Polyamine Concentration By Their Degradation. Acts On Spermidine, Forming N(1)- And N(8)-Acetylspermidine. [C]

COG id: COG1670

COG function: function code J; Acetyltransferases, including N-acetylases of ribosomal proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 N-acetyltransferase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000182
- InterPro:   IPR016181 [H]

Pfam domain/function: PF00583 Acetyltransf_1 [H]

EC number: 2.3.1.57 [C]

Molecular weight: Translated: 19365; Mature: 19365

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHTDRLQIRKYTMDDLQFYASLWGNEKVMRYIGNGTLKTYMQCKKSLEEWVIPSYKNGL
CCCCCCHHEEHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
GLFVLIEKKTGIRIGHAGLVKQQIDGKEEIEIGYWLLPQYWGKGYAKEAAAAFRDYGFQA
EEEEEEECCCCEEECCCHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHCCHHH
LRMNKLISLINPDHPASIFVARKTGLSYEKTTSFHGIDVLVYSIRRVG
HHHHHHHHHCCCCCCCEEEEEECCCCCCHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFHTDRLQIRKYTMDDLQFYASLWGNEKVMRYIGNGTLKTYMQCKKSLEEWVIPSYKNGL
CCCCCCHHEEHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
GLFVLIEKKTGIRIGHAGLVKQQIDGKEEIEIGYWLLPQYWGKGYAKEAAAAFRDYGFQA
EEEEEEECCCCEEECCCHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHCCHHH
LRMNKLISLINPDHPASIFVARKTGLSYEKTTSFHGIDVLVYSIRRVG
HHHHHHHHHCCCCCCCEEEEEECCCCCCHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acetyl-CoA; Spermidine [C]

Specific reaction: Acetyl-CoA + Spermidine --> Coenzyme A + H+ + N8-Acetylspermidine [C]

General reaction: Acyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8682784; 9384377 [H]