Click here to switch to the map view.

The map label for this gene is ymfN [H]

Identifier: 218905500

GI number: 218905500

Start: 4161164

End: 4162861

Strand: Reverse

Name: ymfN [H]

Synonym: BCAH820_4385

Alternate gene names: 218905500

Gene position: 4162861-4161164 (Counterclockwise)

Preceding gene: 218905501

Following gene: 218905499

Centisome position: 78.5

GC content: 35.69

Gene sequence:

>1698_bases
ATGGTTTCGATGACTATTAAACAAGTTGATACGCATGACTATGTAACTGAATATGCGAAAAAAGTTATTAGTGGAAAGAT
AGTTACTAGTAAAAAAGTACGTAAGGCTTGTCAGAGGCATATTCGAGATTTACAACGCCAAGATGATGAGACATTTCCGT
ATGAGTATAGTGTAAAAGAGGCTAATAGGGCGATTATATTTATTGAGCGTTTTTGTAAGCATAGTATCGGTAAGATGGCA
GGAAAGCCGCTTTTACTTGAGTTATGGCAGAAGTTTAATGTCGGTAGTCTTTTTGGTTGGGTGGAAAAAGAAACGGGTTA
TAGACGGTTTTTAGAAGCCCTCATTATGATTGCTCGTAAAAATGGTAAAAGTACTTTAGCATCAGCAATAGCTTTATATT
TATTTATGAAAGATAACGAGTATGGAGCCCGTGTATATACGCTAGCAAATAAACGTGATCAAGCTAAATTGGTATTTGAA
GAAGCAAAGCGAATGGTTAAGCAATCACCAGCCTTACGGCGAAGGGTACGAATCATACGTGACAAATTGTATTACAATGC
GATGAATTCAGAACTGGAGCCACTTGCTAGTGATTCGAAGAAGCAAGATGGTTTAAATACACATGGAGCAATCTTTGATG
AAATTCATGAGTATAAAGATCGTAAATTAATAAATGTTATTCAATCGTCTTATGATGCCCGTACACAACCACTTATTTTG
CATATTACGACCGCTGGTTTTGTTCTTGATGGGCCATTAATGAAGTTTTACGAAGTTGCAGATAAAATGTTAAACGAAAC
GGTCGAGCATGATCGTTTTTTTGCGTTCATTGCAGAGATTGATCCTGAAGATGATTGGAAAGATGAGGAGTGTTGGGTTA
AAGCGAATCCAAACTTAGATGTTACAATCACTCTCGAAAAATTAAGGGAAGCCTATAAAACATATGTTTTGAATAATGAA
GTTAATGAGTTCAAGACGAAGCGTCTTAATTTATTTGTAAATGCAGCTGAGAAATGGCTTGAATGGGATGTAATTAAGAA
AAATTATGAAAAAGAATATGATCTTGAGGTTCTTGAAGGTTGTATGTGTATCGGCGGTGCGGATTTATCTGAAACGACGG
ATTTAACAAGTTCCTTTTTAGAATTTCCACAAGAGGATGGTTCAGTGAAGTGTATTCATCATAGTTTTATTCCAGAGGCT
AAACTGTTAAATAGTGAGGATAGAGCGAATTATGAACTTTGGGTCGAAAAAGGGTATTTAACAGTTATTCCAGGAGAAGT
AATTGACTATGATTTCGTTACAAATTGGTTTGTTAGAATGTCTGAAAAGTACCATGTTCAAGAAGTTTGCTATGATCCAT
TTAACGCAGCGCAGTGGTTTACCCAGATGCAAAATTTAGGGTTTGAGATGGTTAAGGTCCAACAAGGATTTAAGTCAATG
AACTTATCGATGAAGGATTTTGAACGTTTATTATTGCAAGGGAAAGTTAATTTTAATGGTGATTTGATGTTTAGATGGTA
CATGAGTAACGTTAAAACGCAAAAGGATAGTACTGGTAACATAAAGCCCGTAAAAGCCAATAAATATTCAAGGATTGATG
GTGTTGCAGCGGCATTAACGGCACATTTTAGAGCCATGATTTATTTACAAAACATGCCTCAAGAATCGAATCTCGAATTA
TGGACTTTTGATGATTAG

Upstream 100 bases:

>100_bases
CCAAAATATATGCAACAAACACGACAGTATTTAGGTGAGCTAGGGTTAACTGGTGCAAGCCGTAAGAAACTTCAAGAAGA
ATTAGTTAAAGAAGTGGAAG

Downstream 100 bases:

>100_bases
AGGAGGTGAGAAAATGAATTTTTTGCAAGGATGAGAAGAAGGAAACAGCCGACGGAAGAACGAGCAAAAGAGCAATTTAG
TAATTTTGTAAAGTGGTTTG

Product: putative phage terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MVSMTIKQVDTHDYVTEYAKKVISGKIVTSKKVRKACQRHIRDLQRQDDETFPYEYSVKEANRAIIFIERFCKHSIGKMA
GKPLLLELWQKFNVGSLFGWVEKETGYRRFLEALIMIARKNGKSTLASAIALYLFMKDNEYGARVYTLANKRDQAKLVFE
EAKRMVKQSPALRRRVRIIRDKLYYNAMNSELEPLASDSKKQDGLNTHGAIFDEIHEYKDRKLINVIQSSYDARTQPLIL
HITTAGFVLDGPLMKFYEVADKMLNETVEHDRFFAFIAEIDPEDDWKDEECWVKANPNLDVTITLEKLREAYKTYVLNNE
VNEFKTKRLNLFVNAAEKWLEWDVIKKNYEKEYDLEVLEGCMCIGGADLSETTDLTSSFLEFPQEDGSVKCIHHSFIPEA
KLLNSEDRANYELWVEKGYLTVIPGEVIDYDFVTNWFVRMSEKYHVQEVCYDPFNAAQWFTQMQNLGFEMVKVQQGFKSM
NLSMKDFERLLLQGKVNFNGDLMFRWYMSNVKTQKDSTGNIKPVKANKYSRIDGVAAALTAHFRAMIYLQNMPQESNLEL
WTFDD

Sequences:

>Translated_565_residues
MVSMTIKQVDTHDYVTEYAKKVISGKIVTSKKVRKACQRHIRDLQRQDDETFPYEYSVKEANRAIIFIERFCKHSIGKMA
GKPLLLELWQKFNVGSLFGWVEKETGYRRFLEALIMIARKNGKSTLASAIALYLFMKDNEYGARVYTLANKRDQAKLVFE
EAKRMVKQSPALRRRVRIIRDKLYYNAMNSELEPLASDSKKQDGLNTHGAIFDEIHEYKDRKLINVIQSSYDARTQPLIL
HITTAGFVLDGPLMKFYEVADKMLNETVEHDRFFAFIAEIDPEDDWKDEECWVKANPNLDVTITLEKLREAYKTYVLNNE
VNEFKTKRLNLFVNAAEKWLEWDVIKKNYEKEYDLEVLEGCMCIGGADLSETTDLTSSFLEFPQEDGSVKCIHHSFIPEA
KLLNSEDRANYELWVEKGYLTVIPGEVIDYDFVTNWFVRMSEKYHVQEVCYDPFNAAQWFTQMQNLGFEMVKVQQGFKSM
NLSMKDFERLLLQGKVNFNGDLMFRWYMSNVKTQKDSTGNIKPVKANKYSRIDGVAAALTAHFRAMIYLQNMPQESNLEL
WTFDD
>Mature_565_residues
MVSMTIKQVDTHDYVTEYAKKVISGKIVTSKKVRKACQRHIRDLQRQDDETFPYEYSVKEANRAIIFIERFCKHSIGKMA
GKPLLLELWQKFNVGSLFGWVEKETGYRRFLEALIMIARKNGKSTLASAIALYLFMKDNEYGARVYTLANKRDQAKLVFE
EAKRMVKQSPALRRRVRIIRDKLYYNAMNSELEPLASDSKKQDGLNTHGAIFDEIHEYKDRKLINVIQSSYDARTQPLIL
HITTAGFVLDGPLMKFYEVADKMLNETVEHDRFFAFIAEIDPEDDWKDEECWVKANPNLDVTITLEKLREAYKTYVLNNE
VNEFKTKRLNLFVNAAEKWLEWDVIKKNYEKEYDLEVLEGCMCIGGADLSETTDLTSSFLEFPQEDGSVKCIHHSFIPEA
KLLNSEDRANYELWVEKGYLTVIPGEVIDYDFVTNWFVRMSEKYHVQEVCYDPFNAAQWFTQMQNLGFEMVKVQQGFKSM
NLSMKDFERLLLQGKVNFNGDLMFRWYMSNVKTQKDSTGNIKPVKANKYSRIDGVAAALTAHFRAMIYLQNMPQESNLEL
WTFDD

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 65950; Mature: 65950

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSMTIKQVDTHDYVTEYAKKVISGKIVTSKKVRKACQRHIRDLQRQDDETFPYEYSVKE
CCEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHH
ANRAIIFIERFCKHSIGKMAGKPLLLELWQKFNVGSLFGWVEKETGYRRFLEALIMIARK
CCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHC
NGKSTLASAIALYLFMKDNEYGARVYTLANKRDQAKLVFEEAKRMVKQSPALRRRVRIIR
CCHHHHHHHHHHEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
DKLYYNAMNSELEPLASDSKKQDGLNTHGAIFDEIHEYKDRKLINVIQSSYDARTQPLIL
HHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
HITTAGFVLDGPLMKFYEVADKMLNETVEHDRFFAFIAEIDPEDDWKDEECWVKANPNLD
EEEECCEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEECCCEE
VTITLEKLREAYKTYVLNNEVNEFKTKRLNLFVNAAEKWLEWDVIKKNYEKEYDLEVLEG
EEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCCHHHHHH
CMCIGGADLSETTDLTSSFLEFPQEDGSVKCIHHSFIPEAKLLNSEDRANYELWVEKGYL
HHEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCCCEEEEEECCEE
TVIPGEVIDYDFVTNWFVRMSEKYHVQEVCYDPFNAAQWFTQMQNLGFEMVKVQQGFKSM
EEECCHHHCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
NLSMKDFERLLLQGKVNFNGDLMFRWYMSNVKTQKDSTGNIKPVKANKYSRIDGVAAALT
CCCHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
AHFRAMIYLQNMPQESNLELWTFDD
HHHHHHHHHHCCCCCCCCEEEEECC
>Mature Secondary Structure
MVSMTIKQVDTHDYVTEYAKKVISGKIVTSKKVRKACQRHIRDLQRQDDETFPYEYSVKE
CCEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHH
ANRAIIFIERFCKHSIGKMAGKPLLLELWQKFNVGSLFGWVEKETGYRRFLEALIMIARK
CCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHC
NGKSTLASAIALYLFMKDNEYGARVYTLANKRDQAKLVFEEAKRMVKQSPALRRRVRIIR
CCHHHHHHHHHHEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
DKLYYNAMNSELEPLASDSKKQDGLNTHGAIFDEIHEYKDRKLINVIQSSYDARTQPLIL
HHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
HITTAGFVLDGPLMKFYEVADKMLNETVEHDRFFAFIAEIDPEDDWKDEECWVKANPNLD
EEEECCEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEECCCEE
VTITLEKLREAYKTYVLNNEVNEFKTKRLNLFVNAAEKWLEWDVIKKNYEKEYDLEVLEG
EEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCCHHHHHH
CMCIGGADLSETTDLTSSFLEFPQEDGSVKCIHHSFIPEAKLLNSEDRANYELWVEKGYL
HHEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCCCEEEEEECCEE
TVIPGEVIDYDFVTNWFVRMSEKYHVQEVCYDPFNAAQWFTQMQNLGFEMVKVQQGFKSM
EEECCHHHCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
NLSMKDFERLLLQGKVNFNGDLMFRWYMSNVKTQKDSTGNIKPVKANKYSRIDGVAAALT
CCCHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
AHFRAMIYLQNMPQESNLELWTFDD
HHHHHHHHHHCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]