Click here to switch to the map view.

The map label for this gene is yomM [H]

Identifier: 218905481

GI number: 218905481

Start: 4143806

End: 4144765

Strand: Reverse

Name: yomM [H]

Synonym: BCAH820_4366

Alternate gene names: 218905481

Gene position: 4144765-4143806 (Counterclockwise)

Preceding gene: 218905482

Following gene: 218905480

Centisome position: 78.16

GC content: 33.54

Gene sequence:

>960_bases
GTGAAACGAATAGTAGACCAAGCAATTTATGAAAAGCATGTTAGCCAGGAAAACAAAAACCTAGTCAAAGATTTTTTAAT
TGAAAAGAAAGCACAAGGAAAAGCGGCAAGCACTTTACAGCAATACAATTGGGATTTACGAATTATTTTGTTTCTAATAC
ATGAACACTTCGAAAATAAAAACTTGATTGAGTTAACGCGTAAAGACATCCGTAATTTATCTATTATCTTTCAAGAAATG
CGGATGTCTAATGCACGTGTAAATGGACTGATGAGTGCTTTACGTTCAGCGCTTGAATTTTGCGCAGACGATGATGACTA
TAATTATGAATTCAATGTAGGTTCAAGGGTACGAGGTTTACCTCAGAATCCAATTAGAGAAATTACATTTATTACTGATG
ACCAAATTAATTGGTTAATCGATGAATTACTTGAACAAGAGAAATATATGTTAGCAACTTATTTAGCACTTTCTTACTAC
AGTGCAGCACGAAAAAATGAGGTTTATCAAGTTCAAAAAGAAGAACTAACAGAACGGTATTATACAAATATCGTTCGAGG
GAAACGCGGTAAAAAGTTTAGATTATATTACAATCCCCGAGTGCAGAAATGTATTCGTTTATATATAAATCAACGAGGTA
AGGATACTATTCCAGATTTGTTCGTACGAGTTTATAAGAATGGTGAGCGAAAGCTTTTAAATAAGAGTGTATTTAATTAC
TGGTGCAAGATATTCGCTAAAATGCTATACGAAAAAGAGGGTAAGGAATATAAAATCAATCCTCACTGTTTCCGTCATAG
TAGATTAGACAATTTAAAAGTGCAAGGTGTACCACTAGAAAAATTAAAATCGCTTGCGAATCATTCGGATATCTCGACAA
CACAATCTTATTTAAAGGATCGCAGCGAAGAAGATATTGCAGACATTTTTGGAATGGATCCAAGTTGTTTTGCAGCTTAA

Upstream 100 bases:

>100_bases
CCAGTCCGAGTGAAAAAAAAGGTGAGCTTGTAAATAGATTCAATTCATAGATCAAGAGGAGCGATTTCGCTTCTCTTTTT
ATTTTGAGGAGATGATCAGT

Downstream 100 bases:

>100_bases
AGAGGCGTATATGCTTCTTTTTTTTTTATTGCCGAAAAGGAGATGAGGATAGTGGAAGATGCAATTTTTAATTCAGTCAT
TCAACAAGGGGCATTCGCGG

Product: prophage LambdaBa02, site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKRIVDQAIYEKHVSQENKNLVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENKNLIELTRKDIRNLSIIFQEM
RMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPQNPIREITFITDDQINWLIDELLEQEKYMLATYLALSYY
SAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVFNY
WCKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCFAA

Sequences:

>Translated_319_residues
MKRIVDQAIYEKHVSQENKNLVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENKNLIELTRKDIRNLSIIFQEM
RMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPQNPIREITFITDDQINWLIDELLEQEKYMLATYLALSYY
SAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVFNY
WCKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCFAA
>Mature_319_residues
MKRIVDQAIYEKHVSQENKNLVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENKNLIELTRKDIRNLSIIFQEM
RMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPQNPIREITFITDDQINWLIDELLEQEKYMLATYLALSYY
SAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVFNY
WCKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCFAA

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37853; Mature: 37853

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIVDQAIYEKHVSQENKNLVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCC
NLIELTRKDIRNLSIIFQEMRMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
PQNPIREITFITDDQINWLIDELLEQEKYMLATYLALSYYSAARKNEVYQVQKEELTERY
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVFNY
HHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
WCKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKD
HHHHHHHHHHHHCCCCEECCHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHHC
RSEEDIADIFGMDPSCFAA
CCHHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MKRIVDQAIYEKHVSQENKNLVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCC
NLIELTRKDIRNLSIIFQEMRMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
PQNPIREITFITDDQINWLIDELLEQEKYMLATYLALSYYSAARKNEVYQVQKEELTERY
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVFNY
HHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
WCKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKD
HHHHHHHHHHHHCCCCEECCHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHHC
RSEEDIADIFGMDPSCFAA
CCHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]