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The map label for this gene is psd [H]

Identifier: 218905475

GI number: 218905475

Start: 4140686

End: 4141474

Strand: Reverse

Name: psd [H]

Synonym: BCAH820_4360

Alternate gene names: 218905475

Gene position: 4141474-4140686 (Counterclockwise)

Preceding gene: 218905476

Following gene: 218905473

Centisome position: 78.1

GC content: 36.88

Gene sequence:

>789_bases
TTGCGACGTACATTATATCGACTTATGATCGAACTTACAAATGGTCGTTTTACTTCTTATATATTACGTAAATTTGCACA
ATCTCGTTTGAGCTCTATCATTATTCCATCGTATGCGAAAGTGTTTCAAATTAATCAAGATGAGATGGAAAAGGGTTTGA
AGGAATATAGAACATTGCATGAATTATTTACACGTAAGCTAAAAGAAGGAAAGCGTAGTATTGATACAGATGCATCGAGT
ATCGTTAGTCCTGTTGATGGTGTTTTTGCTGATCACGGTCCTATTGAGGACACAAAAACATTTGATATTAAAGGCAAGCG
TTATTCGATTGTGGATATGCTAGGTAATGAAGAACGTGCACAGCGATATGCAGGTGGTACATATATGGTTATTTATTTAA
GCCCAAGTCATTATCATCGTATTCATAGTCCGCTTTCTGGTTCTGTGACTGAAAGATTTGTACTCGGTAGAAAATCATAT
CCGGTAAATGCAGCTGGTATGGAATACGGGAAAGAACCATTGTCAAAAAACTATCGCTCCGTTACAGAAGTGAATAGTGA
CGGTGAACATATGGCGCTTGTAAAAGTAGGAGCTATGTTTGTAAATAGTATTGAGCTGCTGCATGAAAGAGACACTGTTC
AAAAAGGTGAAGAAATGGCATACTTTACATTCGGTTCAACAGTTGTGTTATTGTTTGAAAAAGATATGATAGAAGTAGTG
CAAGAATTGAAGAGTGGACAAGAGCTTCGCCTTGGTGAAAAAATTGCTACTCGATTGGCTCATAAGTAA

Upstream 100 bases:

>100_bases
GTTCTATATGATATGTGGGAATAAGAACTAATTTTACATATGATATAGAAGGAAAAGAAGGGGAAGCTAAAGTTATAGAC
TGATTAGGAGGTTCCGCAAT

Downstream 100 bases:

>100_bases
AAAAGATTTTATAACTGTAAGCAAGATTTATGGACAAAGATGCGTAATGATGAAATTCCCTAGATGGGAGTATTTGTTTA
TTCGAGAGCCATCGCAGGAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK

Sequences:

>Translated_262_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK
>Mature_262_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=274, Percent_Identity=30.2919708029197, Blast_Score=123, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71980843, Length=247, Percent_Identity=28.7449392712551, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71980840, Length=247, Percent_Identity=28.7449392712551, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321609, Length=201, Percent_Identity=28.8557213930348, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24649526, Length=294, Percent_Identity=26.8707482993197, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24649528, Length=294, Percent_Identity=26.8707482993197, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24649524, Length=294, Percent_Identity=26.8707482993197, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 29919; Mature: 29919

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLH
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRSIDTDASSIVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEHHHHCCHHHH
QRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSYPVNAAGMEYGKEPLSKNYRS
HHHCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHH
VTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHHHHHH
QELKSGQELRLGEKIATRLAHK
HHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLH
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRSIDTDASSIVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEHHHHCCHHHH
QRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSYPVNAAGMEYGKEPLSKNYRS
HHHCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHH
VTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHHHHHH
QELKSGQELRLGEKIATRLAHK
HHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA