Click here to switch to the map view.

The map label for this gene is dppE [H]

Identifier: 218904707

GI number: 218904707

Start: 3428080

End: 3429774

Strand: Reverse

Name: dppE [H]

Synonym: BCAH820_3591

Alternate gene names: 218904707

Gene position: 3429774-3428080 (Counterclockwise)

Preceding gene: 218904711

Following gene: 218904706

Centisome position: 64.68

GC content: 35.46

Gene sequence:

>1695_bases
ATGAAGAGAAAAAAGATGAAAAAATTAACAGCGGTTGTAGCACCGGTTTTAGTAATGAGTATGGCATTAACAGCTTGCTC
TGGATCTGGGGAAAAAGATAAAGCAAGCACAACACCAAAAAGCGGTGAAAAAGAAGGCGGAAAACTAGCAGCGAAGCAAG
TGCTTAATTTAACAGAGTCTCAAGAGATTCCATCTATGGACTCTGCTAAAGCGACAGACCAAGTATCGTTTCTCGCTTTA
AACAACGTAATGGAAGGTTTATATCGACTTGATAAAGATAATAAAGCGACACCAGGAGTTGCTGAGTCATATAAAAAGAG
TGATGATGGTAAAAAATACACATTTACATTAAATAAAAATGCAAAATGGTCAAATGGAGAGCCTGTAACAGCGAAAGATT
TCGTGTTTGCTTGGAAACGTGCGGTAGATAAAAATACAGCAGCAGAATATGCATACATTATGTTTGATTTGAAAAATGCA
CAAGCGATTAATGAAGGAAAAGCTGAACTAGATACGTTAGGAGTAAAAGCTGTAGATGACTATACGTTAGAAGTAGAATT
AGAAAATCCAGTTCCTTACTTTGTAGAATTAACTTCATTTGGAACATTTTATCCATTAAACGAGAAATTTGTAAAAGAAA
AAGGAGAAAAGTACGGTTTAGAATCAGATACGACGTTATACAACGGACCGTTTACATTAACAGACTGGCAACATGAAGAA
GGTTGGAAGTTAAAGAAAAATGCACAATACTGGGATAATAAGACAGTTAAGTTGGAAGAAATTAATTTTAACGTAGTAAA
AGATAGCGGTACACGTGTTAACTTATATGAAAGTGGACAAATTGATCGTTCAGGACTTACATCTGAATTTGTTGACAAAT
ATAAATCAAGCCCCGACTTCTTTACACAAAAAACACCGTCAACGTACTTCTTACGCTTAAACCAAAAACGTGGTGGGCAA
GATACAGTGTTAAAGAGCAAAGATTTACGTTTAGCGATTGCAAAAGCGTACGATAAAAAAGGCTTAACGAATGTAATTTT
AAATGATGGTTCTACACCTGCGGATTACTTAGTACCAAAAGAATTTGCTAAGAGCCCAGATGGAAAAGACTTCCGTAAAG
AAAATGGAGATATTTTAAAAACAGATGTAAAAAAAGCAAAAGAGCATTGGGAAAAAGCGAAAAAAGAACTTGGAAAAGAT
GCAATTACAGTGGAACTATTAAACTATGATGGGGATGGTGCGAAAAAAGTAGGAGAATTCTTAAAAGGAGAACTTGAGAA
AAACTTGCCAGGTTTAACAGTGAATTTGAAAAACCAGCCATTTAAACAAAAGTTAAAATTAGAATCAGATCTAGATTATG
ATTTATCTTACGCTGGTTGGGGCCCTGACTACTTAGATCCAATGACATTCATTGATATGTTCGTTACAAATGGCCCTCAT
AACCAAACAGGATATTCAAATCCTAAATATGATGAAATTGTACAAAAAGGTAAAGGCGAGCTATTAACGAAAACGAAAGA
ACGTTGGGATAGCTTACTGAAAGCGGAGAAAATGTTACTGGAAGATGCGGCAATTGCACCATTATATCAACGTGGTGATG
CTATCGTTCAAAGACCTAAAGTAAAAGGTATTGTTCACCATCCAGTTGGTGGAGACTACAGCTATAAATGGGCATATATT
ACAGAGGATAAGTAA

Upstream 100 bases:

>100_bases
CAGAGAAATTAGTAGAATGATAATAAGTAAGAATTTTCTAATAATTAAAGAGAAATCTCTCAAAGTTAATATCGTACATA
TAATTGGGGAGGGTACAAAA

Downstream 100 bases:

>100_bases
GATGGGGGGCGTACAATACGCCCCTTTTTCTATGCACTTTTCTTCCGTCTTCGAATATATAAAATAAAAAAGGGAGAATC
CCATGAAACGAAACACATAC

Product: oligopeptide ABC transporter, oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MKRKKMKKLTAVVAPVLVMSMALTACSGSGEKDKASTTPKSGEKEGGKLAAKQVLNLTESQEIPSMDSAKATDQVSFLAL
NNVMEGLYRLDKDNKATPGVAESYKKSDDGKKYTFTLNKNAKWSNGEPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNA
QAINEGKAELDTLGVKAVDDYTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKYGLESDTTLYNGPFTLTDWQHEE
GWKLKKNAQYWDNKTVKLEEINFNVVKDSGTRVNLYESGQIDRSGLTSEFVDKYKSSPDFFTQKTPSTYFLRLNQKRGGQ
DTVLKSKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPKEFAKSPDGKDFRKENGDILKTDVKKAKEHWEKAKKELGKD
AITVELLNYDGDGAKKVGEFLKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
NQTGYSNPKYDEIVQKGKGELLTKTKERWDSLLKAEKMLLEDAAIAPLYQRGDAIVQRPKVKGIVHHPVGGDYSYKWAYI
TEDK

Sequences:

>Translated_564_residues
MKRKKMKKLTAVVAPVLVMSMALTACSGSGEKDKASTTPKSGEKEGGKLAAKQVLNLTESQEIPSMDSAKATDQVSFLAL
NNVMEGLYRLDKDNKATPGVAESYKKSDDGKKYTFTLNKNAKWSNGEPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNA
QAINEGKAELDTLGVKAVDDYTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKYGLESDTTLYNGPFTLTDWQHEE
GWKLKKNAQYWDNKTVKLEEINFNVVKDSGTRVNLYESGQIDRSGLTSEFVDKYKSSPDFFTQKTPSTYFLRLNQKRGGQ
DTVLKSKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPKEFAKSPDGKDFRKENGDILKTDVKKAKEHWEKAKKELGKD
AITVELLNYDGDGAKKVGEFLKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
NQTGYSNPKYDEIVQKGKGELLTKTKERWDSLLKAEKMLLEDAAIAPLYQRGDAIVQRPKVKGIVHHPVGGDYSYKWAYI
TEDK
>Mature_564_residues
MKRKKMKKLTAVVAPVLVMSMALTACSGSGEKDKASTTPKSGEKEGGKLAAKQVLNLTESQEIPSMDSAKATDQVSFLAL
NNVMEGLYRLDKDNKATPGVAESYKKSDDGKKYTFTLNKNAKWSNGEPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNA
QAINEGKAELDTLGVKAVDDYTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKYGLESDTTLYNGPFTLTDWQHEE
GWKLKKNAQYWDNKTVKLEEINFNVVKDSGTRVNLYESGQIDRSGLTSEFVDKYKSSPDFFTQKTPSTYFLRLNQKRGGQ
DTVLKSKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPKEFAKSPDGKDFRKENGDILKTDVKKAKEHWEKAKKELGKD
AITVELLNYDGDGAKKVGEFLKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
NQTGYSNPKYDEIVQKGKGELLTKTKERWDSLLKAEKMLLEDAAIAPLYQRGDAIVQRPKVKGIVHHPVGGDYSYKWAYI
TEDK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=545, Percent_Identity=29.9082568807339, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI1787495, Length=510, Percent_Identity=32.5490196078431, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI1789397, Length=547, Percent_Identity=27.0566727605119, Blast_Score=189, Evalue=5e-49,
Organism=Escherichia coli, GI1787762, Length=478, Percent_Identity=25.1046025104602, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1789887, Length=515, Percent_Identity=22.5242718446602, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787052, Length=319, Percent_Identity=24.7648902821317, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 63420; Mature: 63420

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKKMKKLTAVVAPVLVMSMALTACSGSGEKDKASTTPKSGEKEGGKLAAKQVLNLTES
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QEIPSMDSAKATDQVSFLALNNVMEGLYRLDKDNKATPGVAESYKKSDDGKKYTFTLNKN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEEECCC
AKWSNGEPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNAQAINEGKAELDTLGVKAVDD
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCHHHHHHCCCEEECC
YTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKYGLESDTTLYNGPFTLTDWQHEE
EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHCHHHCCCCCCCEEECCCEEECCCCCCC
GWKLKKNAQYWDNKTVKLEEINFNVVKDSGTRVNLYESGQIDRSGLTSEFVDKYKSSPDF
CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCC
FTQKTPSTYFLRLNQKRGGQDTVLKSKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPK
CCCCCCCEEEEEEECCCCCCCCEECCCCCEEEEEHHHCCCCCCEEEECCCCCCHHHCCCH
EFAKSPDGKDFRKENGDILKTDVKKAKEHWEKAKKELGKDAITVELLNYDGDGAKKVGEF
HHHCCCCCCCHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHH
LKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
HHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
NQTGYSNPKYDEIVQKGKGELLTKTKERWDSLLKAEKMLLEDAAIAPLYQRGDAIVQRPK
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHCCCC
VKGIVHHPVGGDYSYKWAYITEDK
CCCEEECCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKRKKMKKLTAVVAPVLVMSMALTACSGSGEKDKASTTPKSGEKEGGKLAAKQVLNLTES
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QEIPSMDSAKATDQVSFLALNNVMEGLYRLDKDNKATPGVAESYKKSDDGKKYTFTLNKN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEEECCC
AKWSNGEPVTAKDFVFAWKRAVDKNTAAEYAYIMFDLKNAQAINEGKAELDTLGVKAVDD
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCHHHHHHCCCEEECC
YTLEVELENPVPYFVELTSFGTFYPLNEKFVKEKGEKYGLESDTTLYNGPFTLTDWQHEE
EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHCHHHCCCCCCCEEECCCEEECCCCCCC
GWKLKKNAQYWDNKTVKLEEINFNVVKDSGTRVNLYESGQIDRSGLTSEFVDKYKSSPDF
CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCC
FTQKTPSTYFLRLNQKRGGQDTVLKSKDLRLAIAKAYDKKGLTNVILNDGSTPADYLVPK
CCCCCCCEEEEEEECCCCCCCCEECCCCCEEEEEHHHCCCCCCEEEECCCCCCHHHCCCH
EFAKSPDGKDFRKENGDILKTDVKKAKEHWEKAKKELGKDAITVELLNYDGDGAKKVGEF
HHHCCCCCCCHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHH
LKGELEKNLPGLTVNLKNQPFKQKLKLESDLDYDLSYAGWGPDYLDPMTFIDMFVTNGPH
HHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
NQTGYSNPKYDEIVQKGKGELLTKTKERWDSLLKAEKMLLEDAAIAPLYQRGDAIVQRPK
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHCCCC
VKGIVHHPVGGDYSYKWAYITEDK
CCCEEECCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]