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The map label for this gene is rapF [H]

Identifier: 218904640

GI number: 218904640

Start: 3353248

End: 3354342

Strand: Direct

Name: rapF [H]

Synonym: BCAH820_3524

Alternate gene names: 218904640

Gene position: 3353248-3354342 (Clockwise)

Preceding gene: 218904639

Following gene: 218904641

Centisome position: 63.24

GC content: 29.77

Gene sequence:

>1095_bases
ATGAACGTTCAACTACAAGGTAATGAACAAATTACGAAATTATTTAATGATTGGTATTTAGCTATGCTTAAACAAGATGT
GTCCCAGGCGACAAACTTAAAGCATGAAATTGAGGAAAATGAACTAAACTTTGAAGAAGATGAAAACTTAGCATTATATT
ATTCCTTACTAGACTTTCGATATAAAGTTTTAGTAGATAGTTTAAGTATTTCAAAAGATTGTTTTGATAAAATAGATTCT
TACTTAATCTCATCCAACCATCCACTGGCTTACTACTATCACTTCTTTAAAGGCATTTATGCAACTTTAACCACAGACTT
TAACTTAGCTAGCGAACATTATGAACAAGCTAAGTTATTACTAGTAAATAACACTGATAATCTAGAGCATGCTGAATTTT
ATTATCGAATGGCGATTTTCCATTATCACTTTTATCAACCAATTGAATCCATTGAATATGCAACTAAGGCTAAAGCGATT
TTCGATAAACATACTGGCTACGAAGTTAAAGTTGGATTATGCAAAAATACATTAGGTGCCTCATTTGTATATTTAAAACA
ATATGAACAAGCGGAAGAACAATATAATTCAGCAATACACCTTTTACAAAAATCTAATGAAAAAGAATTAATTTTAAGTG
TACGTAATAATTTGGGTTGGTTATATGCGAGTCAAAACCTCTCCACACTCGCAATCCGTCACCTATCAGAAGTAACTGAA
AAGAAACCTACACATTTCAAAGCTCTCTTCTTGCAAGCAAGAGAACACTCTAAACTAGATGAAACTAGTATTGCTGAAGG
GTTAATCCAAAAAGGGGTAAAAATTTGTACTGAATTAAATAATGAAGAATATATATATCATTTTAAAATTCTAAACGAAC
TAAATAATAATGTTGCTTCTGAAGAATTAGAAACAATTATTCTTAAAGGAATTACGTTTTTCGACAAAGAATTATTATAT
AACTACACTCAAGAATACTCAGAAAAATTAGCTGTTAAATTTTATAGTGAAAATAACCACATTAAGGCAAGTGAATATTT
TCATAAAGCGTTACAAGCAAAAGAAAAAACGTTTGAGAAAGGGGCATTGAAATGA

Upstream 100 bases:

>100_bases
AGCTCGTTAAACAAATATTGAGAAATAAAAATTACATTTCTAAATATTGTTATTTTTGATAATATATTTTATAAGAATAT
TCAAAAAGCGAGGGGATTTC

Downstream 100 bases:

>100_bases
TTAAAAAAATTAGCTCTGTTTTTTTAGGACTATCTGTTTTCGGTATTCTAGCTACTGGTATTCATAGTTCATTTACATAC
CAAGCGGGTCATGCTGATCT

Product: putative response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MNVQLQGNEQITKLFNDWYLAMLKQDVSQATNLKHEIEENELNFEEDENLALYYSLLDFRYKVLVDSLSISKDCFDKIDS
YLISSNHPLAYYYHFFKGIYATLTTDFNLASEHYEQAKLLLVNNTDNLEHAEFYYRMAIFHYHFYQPIESIEYATKAKAI
FDKHTGYEVKVGLCKNTLGASFVYLKQYEQAEEQYNSAIHLLQKSNEKELILSVRNNLGWLYASQNLSTLAIRHLSEVTE
KKPTHFKALFLQAREHSKLDETSIAEGLIQKGVKICTELNNEEYIYHFKILNELNNNVASEELETIILKGITFFDKELLY
NYTQEYSEKLAVKFYSENNHIKASEYFHKALQAKEKTFEKGALK

Sequences:

>Translated_364_residues
MNVQLQGNEQITKLFNDWYLAMLKQDVSQATNLKHEIEENELNFEEDENLALYYSLLDFRYKVLVDSLSISKDCFDKIDS
YLISSNHPLAYYYHFFKGIYATLTTDFNLASEHYEQAKLLLVNNTDNLEHAEFYYRMAIFHYHFYQPIESIEYATKAKAI
FDKHTGYEVKVGLCKNTLGASFVYLKQYEQAEEQYNSAIHLLQKSNEKELILSVRNNLGWLYASQNLSTLAIRHLSEVTE
KKPTHFKALFLQAREHSKLDETSIAEGLIQKGVKICTELNNEEYIYHFKILNELNNNVASEELETIILKGITFFDKELLY
NYTQEYSEKLAVKFYSENNHIKASEYFHKALQAKEKTFEKGALK
>Mature_364_residues
MNVQLQGNEQITKLFNDWYLAMLKQDVSQATNLKHEIEENELNFEEDENLALYYSLLDFRYKVLVDSLSISKDCFDKIDS
YLISSNHPLAYYYHFFKGIYATLTTDFNLASEHYEQAKLLLVNNTDNLEHAEFYYRMAIFHYHFYQPIESIEYATKAKAI
FDKHTGYEVKVGLCKNTLGASFVYLKQYEQAEEQYNSAIHLLQKSNEKELILSVRNNLGWLYASQNLSTLAIRHLSEVTE
KKPTHFKALFLQAREHSKLDETSIAEGLIQKGVKICTELNNEEYIYHFKILNELNNNVASEELETIILKGITFFDKELLY
NYTQEYSEKLAVKFYSENNHIKASEYFHKALQAKEKTFEKGALK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 42690; Mature: 42690

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVQLQGNEQITKLFNDWYLAMLKQDVSQATNLKHEIEENELNFEEDENLALYYSLLDFR
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEHHHHHHH
YKVLVDSLSISKDCFDKIDSYLISSNHPLAYYYHFFKGIYATLTTDFNLASEHYEQAKLL
HHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEE
LVNNTDNLEHAEFYYRMAIFHYHFYQPIESIEYATKAKAIFDKHTGYEVKVGLCKNTLGA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCC
SFVYLKQYEQAEEQYNSAIHLLQKSNEKELILSVRNNLGWLYASQNLSTLAIRHLSEVTE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHH
KKPTHFKALFLQAREHSKLDETSIAEGLIQKGVKICTELNNEEYIYHFKILNELNNNVAS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCHHH
EELETIILKGITFFDKELLYNYTQEYSEKLAVKFYSENNHIKASEYFHKALQAKEKTFEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHC
GALK
CCCC
>Mature Secondary Structure
MNVQLQGNEQITKLFNDWYLAMLKQDVSQATNLKHEIEENELNFEEDENLALYYSLLDFR
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEHHHHHHH
YKVLVDSLSISKDCFDKIDSYLISSNHPLAYYYHFFKGIYATLTTDFNLASEHYEQAKLL
HHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEE
LVNNTDNLEHAEFYYRMAIFHYHFYQPIESIEYATKAKAIFDKHTGYEVKVGLCKNTLGA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCC
SFVYLKQYEQAEEQYNSAIHLLQKSNEKELILSVRNNLGWLYASQNLSTLAIRHLSEVTE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHH
KKPTHFKALFLQAREHSKLDETSIAEGLIQKGVKICTELNNEEYIYHFKILNELNNNVAS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCHHH
EELETIILKGITFFDKELLYNYTQEYSEKLAVKFYSENNHIKASEYFHKALQAKEKTFEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHC
GALK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]