Click here to switch to the map view.

The map label for this gene is yddE [H]

Identifier: 218904609

GI number: 218904609

Start: 3321878

End: 3322735

Strand: Reverse

Name: yddE [H]

Synonym: BCAH820_3493

Alternate gene names: 218904609

Gene position: 3322735-3321878 (Counterclockwise)

Preceding gene: 218904610

Following gene: 218904607

Centisome position: 62.66

GC content: 34.03

Gene sequence:

>858_bases
ATGAAACTATCCGTGTATGTTGCAAGTGCATTTAGCAAGGATCATAAAGGCGGAAATAAAGCAGGAGTGGTATTTATTGA
GAATTCATTGACCACTACTCAAAAAATGGCAATAGCCAAACAACTGGGTTATGCGGAAACCGCATTTATATCAGAATCTG
AAATTGCTGATTATAAATTTGAGTATTTTACACCAAAAGAAGAAGTTGATTTATGTGGTCATGCTACAATTGGCTCTTTC
GCGATACTGATGCATTTAAATAAACTTTTCAGGAATCGCTATACAATTGAAACAAACAGCGGTGTTCTTACTATTACCAT
AAAAGATGACAGCATATTCATGGAACAAAACAATCCGATATTCTATGATGTTGTATCTCCAAACGAGTTCATCGACTGTT
TTGACATGAAAGCTATAGATAATAAATATCCAATTCAAATTGTCTCCACAGGCTTAAAAGATATTTTAATTCCTATAAAA
AGCGAAACACGATTACATGCACTGCAGCCTAGTTTTGAAAAAATTAAAGAAATCAGCAAGTATTATAATGTTGTCGGGAT
GCATCTATATACTTTTAATGACGATCGAATTATATGCAGGAATTTTGCACCACTATACGACATTAATGAAGAAGCAGCGA
CTGGAACTTCAAATGGTGCATTAGCTTGCTACCTTCATGAACAGCACAACTTGCAAAAAGAAGTCTATGTATTTGAACAA
GGTTATTCTTTGCAATCGCCTTCTGAAATATTAGTTACATTAGCAACCAATAGCAAGAATGAAATAGAAAAGGTTTATGT
TGGCGGCAAAGGCTATTACTGTGAAACTAAGTGTTTAAATGTAGAAAATATGGAGTGA

Upstream 100 bases:

>100_bases
AGCAACTTCCTCTGCTAGTAGTAGTTCATAATGTGTAACTGCTTATGCTTTTGTAAATTATGATGACTCTATATAACTCC
TTGGATGAGGAAGGTGTCTT

Downstream 100 bases:

>100_bases
AAATAAAAACAACGAATAAAAAGGTTGAGAAAATACTTTCTCGACCTCGGACTGTAGACAAAGTATCTGATTATTCGATG
CTTTGTCTTTTTTCTTTGTA

Product: phenazine biosynthesis protein, PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKLSVYVASAFSKDHKGGNKAGVVFIENSLTTTQKMAIAKQLGYAETAFISESEIADYKFEYFTPKEEVDLCGHATIGSF
AILMHLNKLFRNRYTIETNSGVLTITIKDDSIFMEQNNPIFYDVVSPNEFIDCFDMKAIDNKYPIQIVSTGLKDILIPIK
SETRLHALQPSFEKIKEISKYYNVVGMHLYTFNDDRIICRNFAPLYDINEEAATGTSNGALACYLHEQHNLQKEVYVFEQ
GYSLQSPSEILVTLATNSKNEIEKVYVGGKGYYCETKCLNVENME

Sequences:

>Translated_285_residues
MKLSVYVASAFSKDHKGGNKAGVVFIENSLTTTQKMAIAKQLGYAETAFISESEIADYKFEYFTPKEEVDLCGHATIGSF
AILMHLNKLFRNRYTIETNSGVLTITIKDDSIFMEQNNPIFYDVVSPNEFIDCFDMKAIDNKYPIQIVSTGLKDILIPIK
SETRLHALQPSFEKIKEISKYYNVVGMHLYTFNDDRIICRNFAPLYDINEEAATGTSNGALACYLHEQHNLQKEVYVFEQ
GYSLQSPSEILVTLATNSKNEIEKVYVGGKGYYCETKCLNVENME
>Mature_285_residues
MKLSVYVASAFSKDHKGGNKAGVVFIENSLTTTQKMAIAKQLGYAETAFISESEIADYKFEYFTPKEEVDLCGHATIGSF
AILMHLNKLFRNRYTIETNSGVLTITIKDDSIFMEQNNPIFYDVVSPNEFIDCFDMKAIDNKYPIQIVSTGLKDILIPIK
SETRLHALQPSFEKIKEISKYYNVVGMHLYTFNDDRIICRNFAPLYDINEEAATGTSNGALACYLHEQHNLQKEVYVFEQ
GYSLQSPSEILVTLATNSKNEIEKVYVGGKGYYCETKCLNVENME

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=259, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI74316009, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1787737, Length=284, Percent_Identity=30.9859154929577, Blast_Score=121, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=268, Percent_Identity=26.4925373134328, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32291; Mature: 32291

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSVYVASAFSKDHKGGNKAGVVFIENSLTTTQKMAIAKQLGYAETAFISESEIADYKF
CEEEEEEEEHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHEEECCCCCCCEEE
EYFTPKEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKDDSIFMEQNNPI
EEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCEEEEECCCCE
FYDVVSPNEFIDCFDMKAIDNKYPIQIVSTGLKDILIPIKSETRLHALQPSFEKIKEISK
EEEEECCCHHEEEECCEECCCCCCEEEEECCCCEEEEECCCCCEEEECCCCHHHHHHHHH
YYNVVGMHLYTFNDDRIICRNFAPLYDINEEAATGTSNGALACYLHEQHNLQKEVYVFEQ
HHHEEEEEEEEECCCEEEEECCCCCEECCCHHCCCCCCCEEEEEEECCCCCCEEEEEEEC
GYSLQSPSEILVTLATNSKNEIEKVYVGGKGYYCETKCLNVENME
CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MKLSVYVASAFSKDHKGGNKAGVVFIENSLTTTQKMAIAKQLGYAETAFISESEIADYKF
CEEEEEEEEHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHEEECCCCCCCEEE
EYFTPKEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKDDSIFMEQNNPI
EEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCEEEEECCCCE
FYDVVSPNEFIDCFDMKAIDNKYPIQIVSTGLKDILIPIKSETRLHALQPSFEKIKEISK
EEEEECCCHHEEEECCEECCCCCCEEEEECCCCEEEEECCCCCEEEECCCCHHHHHHHHH
YYNVVGMHLYTFNDDRIICRNFAPLYDINEEAATGTSNGALACYLHEQHNLQKEVYVFEQ
HHHEEEEEEEEECCCEEEEECCCCCEECCCHHCCCCCCCEEEEEEECCCCCCEEEEEEEC
GYSLQSPSEILVTLATNSKNEIEKVYVGGKGYYCETKCLNVENME
CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]