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The map label for this gene is yddE [C]

Identifier: 218904551

GI number: 218904551

Start: 3272348

End: 3273247

Strand: Reverse

Name: yddE [C]

Synonym: BCAH820_3435

Alternate gene names: 218904551

Gene position: 3273247-3272348 (Counterclockwise)

Preceding gene: 218904552

Following gene: 218904549

Centisome position: 61.73

GC content: 36.56

Gene sequence:

>900_bases
ATGAAGACTATAAACGTATTTCATTATGACGCATTTACGAATAAACCGAATATGGGGAATCCAGCAGGTATTGTATTAGA
GGCAGATGGATTAACGGAAGAGGAAATGCAAATTATTGCTGAAAAAGTTGGATATAACGAAACAACTTTTGTTCTTTCCT
CAGAAGTAGGAGATATAAGAATGCGCTACTTTACACCTGGTTTTGAAATGGATTTATGTGGTCATGGGACAGTGGGGACG
CTATATGCCTTGCGCGAAAAAGGTTTATTAGAAGGGAAAAGTAACCTTACGATTGAAGCGAAGGCTGGGATTTTACCAAT
ACAAATAGGTGTAAATGAAAATGGAGAAACCTTTATTAAAATGAGGCAGGCAGCACCTCAGTTTAAAGAATTTACAGGTT
CAAAAGAAGAATTAGCTCATAGTATCGGTTTAGAAGTAAATGATTTAGATGTAAGTTTACCGATTGTATATGGAAGTACT
GGTAATTGGACTGTAATTGTACCGATTAAAAATCTAGATGCGTGTGAGAGAATGAAGCCTAACAATGAGATGTTTCCATC
AGTATTAAAAGAAATACCTAACGCTTCTATTCACCCAATTTGTCTAGAAACTTATGATGAACTAGCACAAATGCATGGAC
GTCATTTCTCATCGGCTTATGCTGGAACGATAGAAGATCCAGTGACAGGAACAGCTTCAGGTGTAATGGGGGCGTATTAT
GCGATGTATTTGGAAAAAGATTTTGACCATGAAATGGAGTTAATTGTTGAACAAGGACAGGAAATACATAAAGATGGTCG
TGTAACGGTGTATGTAACGAAAGTTGAAGGGAATGCGAATTTACAAATTGATATTGCTGGAACAGCGGTGTATGTGAAAG
AATTTGAAGTTTCAATATAA

Upstream 100 bases:

>100_bases
ATGAAAAGATGCAGAGAATATTTTGGAGAAATAATTGTTCGTTGAAAACGGAGATAGAGCTTTATTATAAAATTTTTAAA
GAAGGTTAGGAGAAAAGAAA

Downstream 100 bases:

>100_bases
AAAAGAAAGCCCGGCATACATCCGGACTTTCATTATCTGTTCAATACTTCAATATACGAAGCATCTCCAGTTGTTCTTAA
AGCAGAGCGAAAATTGTTAT

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
LYALREKGLLEGKSNLTIEAKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLDACERMKPNNEMFPSVLKEIPNASIHPICLETYDELAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
AMYLEKDFDHEMELIVEQGQEIHKDGRVTVYVTKVEGNANLQIDIAGTAVYVKEFEVSI

Sequences:

>Translated_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
LYALREKGLLEGKSNLTIEAKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLDACERMKPNNEMFPSVLKEIPNASIHPICLETYDELAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
AMYLEKDFDHEMELIVEQGQEIHKDGRVTVYVTKVEGNANLQIDIAGTAVYVKEFEVSI
>Mature_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
LYALREKGLLEGKSNLTIEAKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLDACERMKPNNEMFPSVLKEIPNASIHPICLETYDELAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
AMYLEKDFDHEMELIVEQGQEIHKDGRVTVYVTKVEGNANLQIDIAGTAVYVKEFEVSI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=297, Percent_Identity=33.6700336700337, Blast_Score=149, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6321818, Length=304, Percent_Identity=26.9736842105263, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33015; Mature: 33015

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCHHEEE
MRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPIKNLDACERMKP
EHHHCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEMFPSVLKEIPNASIHPICLETYDELAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AMYLEKDFDHEMELIVEQGQEIHKDGRVTVYVTKVEGNANLQIDIAGTAVYVKEFEVSI
HHHHHCCCCHHHHHHHHCCHHHHCCCCEEEEEEEECCCCEEEEEEECEEEEEEEEEECC
>Mature Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCHHEEE
MRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPIKNLDACERMKP
EHHHCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEMFPSVLKEIPNASIHPICLETYDELAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AMYLEKDFDHEMELIVEQGQEIHKDGRVTVYVTKVEGNANLQIDIAGTAVYVKEFEVSI
HHHHHCCCCHHHHHHHHCCHHHHCCCCEEEEEEEECCCCEEEEEEECEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]