BacMap

Definition	Bacillus cereus AH820, complete genome.
Accession	NC_011773
Length	5,302,683

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The map label for this gene is yjdA [H]

Identifier: 218904476

GI number: 218904476

Start: 3204665

End: 3205423

Strand: Reverse

Name: yjdA [H]

Synonym: BCAH820_3360

Alternate gene names: 218904476

Gene position: 3205423-3204665 (Counterclockwise)

Preceding gene: 218904477

Following gene: 218904475

Centisome position: 60.45

GC content: 40.18

Gene sequence:

>759_bases
GTGAAGAAAATAGCAATTGTAACAGGGGCCACTCGTCTGAATGGAATTGGTGCAGCTGTATGCAAAGTGCTTGCTCAAAA
AGGAATAGACATTTTTTTCACGTATTGGTCTCAGTATGATAAAGCGATGCCGTGGGGAATGCATGACAAAGAGCCCTTTT
TGTTGAAAGAGGAGATTGAAAGTTACGGTGTTCGATGTGAAATGGCAGAAATCAACTTATCTCAGTCGTATTCGCCCAAT
CGTTTGTTTTATATGGTATCAGAACGATTAGGTGATCCATCTATTTTAATTAATAATGCAGCGTATGCTACTCATACGAG
AATTGAGGAATTAAATGTAGAACAGTTAGATAAACATTATACGGTTAATGTTCGGGCTACTATGTTATTAAGTTCATTAT
TTATAAAACAGTATGCAAGCAAGACGAGTGGGAGTATTATTAATCTTACTTCAGGACAGTCGCTCGGGCCAATGCCTGAT
GAACTAGCATACGCAGCAACGAAAGGAGCAATTGAAGCATTTACAAAATCAGTAGCACCAGTTGCGATGGAGAAGGGGAT
TACAGTAAATGCTGTTGATCCAGGACCGACGAATACAGGATGGATTACAGAGGAGCTGAAGCATCATTTAGTATGGAAGT
TCCCGCAAGGTAAAGTAGGAGAGCCGGTGGATGCTGCGCGCTTAATATCTTTTTTAGTAAGTGAAGAAGCGAAATGGATT
ACTGGGCAAGTTATTCATTCGAATGGCGGTTACTCATAA

Upstream 100 bases:

>100_bases
TTTTAAAATTAGGTGCAGAACGTATATTGTCAAATATTGAATAAAAAGATAGATCCTCTGTATTCGTGCAGAGGATTTAT
CCATAGGTGGAGGAGAAAAG

Downstream 100 bases:

>100_bases
ATATATTATGTTAACAATTGTTGAGAAACAAAAAAACGAAAGAAAATTTTATTTTTTTGTATAAATAAAATGTCAAGAAA
GATAAAAATTTGATAGAAGA

Product: 3-ketoacyl-(acyl-carrier-protein) reductase

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKKIAIVTGATRLNGIGAAVCKVLAQKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIESYGVRCEMAEINLSQSYSPN
RLFYMVSERLGDPSILINNAAYATHTRIEELNVEQLDKHYTVNVRATMLLSSLFIKQYASKTSGSIINLTSGQSLGPMPD
ELAYAATKGAIEAFTKSVAPVAMEKGITVNAVDPGPTNTGWITEELKHHLVWKFPQGKVGEPVDAARLISFLVSEEAKWI
TGQVIHSNGGYS

Sequences:

>Translated_252_residues
MKKIAIVTGATRLNGIGAAVCKVLAQKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIESYGVRCEMAEINLSQSYSPN
RLFYMVSERLGDPSILINNAAYATHTRIEELNVEQLDKHYTVNVRATMLLSSLFIKQYASKTSGSIINLTSGQSLGPMPD
ELAYAATKGAIEAFTKSVAPVAMEKGITVNAVDPGPTNTGWITEELKHHLVWKFPQGKVGEPVDAARLISFLVSEEAKWI
TGQVIHSNGGYS
>Mature_252_residues
MKKIAIVTGATRLNGIGAAVCKVLAQKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIESYGVRCEMAEINLSQSYSPN
RLFYMVSERLGDPSILINNAAYATHTRIEELNVEQLDKHYTVNVRATMLLSSLFIKQYASKTSGSIINLTSGQSLGPMPD
ELAYAATKGAIEAFTKSVAPVAMEKGITVNAVDPGPTNTGWITEELKHHLVWKFPQGKVGEPVDAARLISFLVSEEAKWI
TGQVIHSNGGYS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=27.1653543307087, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=24.8, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI66933014, Length=207, Percent_Identity=26.0869565217391, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7705925, Length=168, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=27.1317829457364, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI15277342, Length=166, Percent_Identity=28.9156626506024, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=25.0965250965251, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=30.9803921568627, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=28.740157480315, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=28.3464566929134, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=29.7619047619048, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082100, Length=264, Percent_Identity=25.3787878787879, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI2367175, Length=261, Percent_Identity=27.2030651340996, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=25, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=25.8823529411765, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=25.2918287937743, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790717, Length=202, Percent_Identity=22.7722772277228, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=27.9850746268657, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=27.8810408921933, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=25.78125, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=275, Percent_Identity=30.5454545454545, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=27.4074074074074, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=27.1375464684015, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=24.8031496062992, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=274, Percent_Identity=27.7372262773723, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=27.3062730627306, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=25.3676470588235, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=27.5193798449612, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=28.2352941176471, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=261, Percent_Identity=24.5210727969349, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=25.5725190839695, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=197, Percent_Identity=29.9492385786802, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=202, Percent_Identity=27.2277227722772, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=25.2830188679245, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=25.6603773584906, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=26.3940520446097, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=261, Percent_Identity=26.0536398467433, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=200, Percent_Identity=26.5, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=26.3940520446097, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=261, Percent_Identity=23.7547892720307, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=27.1317829457364, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24639444, Length=258, Percent_Identity=26.7441860465116, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=28.2945736434109, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=263, Percent_Identity=30.7984790874525, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571526, Length=169, Percent_Identity=33.1360946745562, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24644339, Length=266, Percent_Identity=27.4436090225564, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24644337, Length=169, Percent_Identity=28.9940828402367, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=26.3565891472868, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 27792; Mature: 27792

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIAIVTGATRLNGIGAAVCKVLAQKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIE
CCEEEEEECCHHHCCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHHHH
SYGVRCEMAEINLSQSYSPNRLFYMVSERLGDPSILINNAAYATHTRIEELNVEQLDKHY
HHCCEEEEEEECCCCCCCCCEEEEEEHHHCCCCEEEEECCCHHHHHHHHHCCHHHHCCEE
TVNVRATMLLSSLFIKQYASKTSGSIINLTSGQSLGPMPDELAYAATKGAIEAFTKSVAP
EEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
VAMEKGITVNAVDPGPTNTGWITEELKHHLVWKFPQGKVGEPVDAARLISFLVSEEAKWI
HHHHCCCEEEECCCCCCCCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCEE
TGQVIHSNGGYS
EEEEEECCCCCC
>Mature Secondary Structure
MKKIAIVTGATRLNGIGAAVCKVLAQKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIE
CCEEEEEECCHHHCCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHHHH
SYGVRCEMAEINLSQSYSPNRLFYMVSERLGDPSILINNAAYATHTRIEELNVEQLDKHY
HHCCEEEEEEECCCCCCCCCEEEEEEHHHCCCCEEEEECCCHHHHHHHHHCCHHHHCCEE
TVNVRATMLLSSLFIKQYASKTSGSIINLTSGQSLGPMPDELAYAATKGAIEAFTKSVAP
EEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
VAMEKGITVNAVDPGPTNTGWITEELKHHLVWKFPQGKVGEPVDAARLISFLVSEEAKWI
HHHHCCCEEEECCCCCCCCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCEE
TGQVIHSNGGYS
EEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]