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The map label for this gene is ywoH [H]

Identifier: 218904437

GI number: 218904437

Start: 3169611

End: 3170027

Strand: Direct

Name: ywoH [H]

Synonym: BCAH820_3321

Alternate gene names: 218904437

Gene position: 3169611-3170027 (Clockwise)

Preceding gene: 218904433

Following gene: 218904438

Centisome position: 59.77

GC content: 36.93

Gene sequence:

>417_bases
ATGGACGAAAAACAACATTTTTTTCACATTGTCAGCCAGACTTCTCGGAAGTTTACGAAGAAATTTAATGAACGTGTATC
TCCCACTGGGTTATTTAGTGCGCAATGGGCTGTAATTTTCCGCATCAATCAAACTGGTTCTTGTACGCAAACTGAATTGT
GCCAGTATTTAAATGTTGAATCACCAACGATGACTCGTACGTTAACACGTATGGAAACGATGGGCTGGATTATTCGTACA
GAAGGAAAAGATCGCCGTGAGAAGCTCATTTCTTTATCAGAAACAGCGATAAAAATGATTCCGGTATGGCAAGAAGAAGT
TGATACTTTCGAAGAAAAGACGCTAGAAGGTATTAACGAAGATGATTTACATCAAGCATTTCAAGTGTTACAACAAATTA
TTAAAAACTTAGATTAA

Upstream 100 bases:

>100_bases
TATACGAAATTTTTACATAAATCAACATGTCTATTACTAGACAATTATAATAAAAAAGTATATAGTTAGCTAGGTAACTA
ATTTGAAAGGATCAACATAC

Downstream 100 bases:

>100_bases
ATTGGAGGGATGACAATGCAAAGTGAAAAACTTTGGACGAAGGATTTCCTCGGAACTTGTTTTAGTAGTCTCTTTCTCTT
TTTAACATTTTACATGCTAA

Product: transcriptional regulator, MarR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MDEKQHFFHIVSQTSRKFTKKFNERVSPTGLFSAQWAVIFRINQTGSCTQTELCQYLNVESPTMTRTLTRMETMGWIIRT
EGKDRREKLISLSETAIKMIPVWQEEVDTFEEKTLEGINEDDLHQAFQVLQQIIKNLD

Sequences:

>Translated_138_residues
MDEKQHFFHIVSQTSRKFTKKFNERVSPTGLFSAQWAVIFRINQTGSCTQTELCQYLNVESPTMTRTLTRMETMGWIIRT
EGKDRREKLISLSETAIKMIPVWQEEVDTFEEKTLEGINEDDLHQAFQVLQQIIKNLD
>Mature_138_residues
MDEKQHFFHIVSQTSRKFTKKFNERVSPTGLFSAQWAVIFRINQTGSCTQTELCQYLNVESPTMTRTLTRMETMGWIIRT
EGKDRREKLISLSETAIKMIPVWQEEVDTFEEKTLEGINEDDLHQAFQVLQQIIKNLD

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16217; Mature: 16217

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEKQHFFHIVSQTSRKFTKKFNERVSPTGLFSAQWAVIFRINQTGSCTQTELCQYLNVE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCC
SPTMTRTLTRMETMGWIIRTEGKDRREKLISLSETAIKMIPVWQEEVDTFEEKTLEGINE
CCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
DDLHQAFQVLQQIIKNLD
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDEKQHFFHIVSQTSRKFTKKFNERVSPTGLFSAQWAVIFRINQTGSCTQTELCQYLNVE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCC
SPTMTRTLTRMETMGWIIRTEGKDRREKLISLSETAIKMIPVWQEEVDTFEEKTLEGINE
CCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
DDLHQAFQVLQQIIKNLD
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]