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The map label for this gene is rapF [H]

Identifier: 218904391

GI number: 218904391

Start: 3118600

End: 3119715

Strand: Direct

Name: rapF [H]

Synonym: BCAH820_3275

Alternate gene names: 218904391

Gene position: 3118600-3119715 (Clockwise)

Preceding gene: 218904390

Following gene: 218904392

Centisome position: 58.81

GC content: 33.15

Gene sequence:

>1116_bases
GTGAGTGTTTCAGTAAAGGGAAATGAGCAATTAACCTCTCTATTGAACGACTGGTATCGATCTATGCTATCTCAACAAGT
TGTAAAAGCTACTAATCTAAAAAAGAAAATTGATGAAAAAATTACTAAGTTAAGCATTGAGTCAAATCAAGAACGTCAGG
ATCAAAATTTGTTACTATATTACTCACTACTTGAATTTCGTTACACAGTCTTAACAGATAGCCTCGGTATTCAACAAAAT
AGTTTTGATGCTATTAGTGATTACGATATGCCTACAGACCATTTTCTACGCTTCTATTATCACTTTTTTAAATCCATTCA
TTCCACTTTTATATCAAGTTTTACTGAGGCAGAGGAACATTATAAACTGGCAGAAAAGATACTAGTAAACATTCCAGATG
AGATTGAACATGCTGAATTCTACTATAGAATTGCTACTTTTTATCATCATACCTATAACATGCTCGCTGCTATCGAATAC
GCAAATAAATCGAAAGCAATCTTTTCGAAGTATGAAGGTTATGAAGTAAAAACAGCCTTTTGTAATAGTTTGTTAGGGGG
TTGCTGTATCTATTTAAAGCAGTACGAACAAGCAGAAGAATATCTACATTGTGCAATTGAATTACTACAGAAGAATAAGG
AAGAAGATTCCTTGTTATACGTAAAAAGTACTATGGGATGGCTGTATTCTGATCAAAGTATGTCTACGTTAGCTATTCGT
CACCTTTCAGAAGTAACAGAAAAAATCCCTACACACTTCAAAGCTATCTTCCTACAGGCTAAGGAACATTATAAATTAGG
AGAACAATCCGCAGCTAGCAAACTCATTGATAGGGGATTACAGATCTGCAGAGGAATTCATAACGAAGAATACACACACC
ACTTCTCTATTTTAAAAAGAGTAAATGAAAATATTCCACTGGAAGAATTAGAAAAAATCATTCAAGAAGGAATCTTATAC
TTTGAGCAAGAAGAATTATGGGAATATGTTGTCGAATACGCCGAATTATTTGCCACAAAATGTAGACAATTTGAGAACCA
CCAAAAGGTAAGTGATTATTTCCATATTTGTTATCAAGCAAGACGAAAATCAATCGAAAAAGGAGTGTTAAAATAA

Upstream 100 bases:

>100_bases
TTGAAAAAATTGTAAAACACCTCCATTTTTCCTTCTATTTTGCTATGATAGTTACAATTAAATAGGATTAAGATATTTCT
ATAGGATGGGGGAGTATATA

Downstream 100 bases:

>100_bases
TGAAAAAAATCAGCCTATTATTATCGGGTATTGCTTTTATTGGGATTCTAACGGTGGGAATTTCTCCACTTTCTAAAGCG
GATCAGTTTGCTACTCATGG

Product: TPR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSVSVKGNEQLTSLLNDWYRSMLSQQVVKATNLKKKIDEKITKLSIESNQERQDQNLLLYYSLLEFRYTVLTDSLGIQQN
SFDAISDYDMPTDHFLRFYYHFFKSIHSTFISSFTEAEEHYKLAEKILVNIPDEIEHAEFYYRIATFYHHTYNMLAAIEY
ANKSKAIFSKYEGYEVKTAFCNSLLGGCCIYLKQYEQAEEYLHCAIELLQKNKEEDSLLYVKSTMGWLYSDQSMSTLAIR
HLSEVTEKIPTHFKAIFLQAKEHYKLGEQSAASKLIDRGLQICRGIHNEEYTHHFSILKRVNENIPLEELEKIIQEGILY
FEQEELWEYVVEYAELFATKCRQFENHQKVSDYFHICYQARRKSIEKGVLK

Sequences:

>Translated_371_residues
MSVSVKGNEQLTSLLNDWYRSMLSQQVVKATNLKKKIDEKITKLSIESNQERQDQNLLLYYSLLEFRYTVLTDSLGIQQN
SFDAISDYDMPTDHFLRFYYHFFKSIHSTFISSFTEAEEHYKLAEKILVNIPDEIEHAEFYYRIATFYHHTYNMLAAIEY
ANKSKAIFSKYEGYEVKTAFCNSLLGGCCIYLKQYEQAEEYLHCAIELLQKNKEEDSLLYVKSTMGWLYSDQSMSTLAIR
HLSEVTEKIPTHFKAIFLQAKEHYKLGEQSAASKLIDRGLQICRGIHNEEYTHHFSILKRVNENIPLEELEKIIQEGILY
FEQEELWEYVVEYAELFATKCRQFENHQKVSDYFHICYQARRKSIEKGVLK
>Mature_370_residues
SVSVKGNEQLTSLLNDWYRSMLSQQVVKATNLKKKIDEKITKLSIESNQERQDQNLLLYYSLLEFRYTVLTDSLGIQQNS
FDAISDYDMPTDHFLRFYYHFFKSIHSTFISSFTEAEEHYKLAEKILVNIPDEIEHAEFYYRIATFYHHTYNMLAAIEYA
NKSKAIFSKYEGYEVKTAFCNSLLGGCCIYLKQYEQAEEYLHCAIELLQKNKEEDSLLYVKSTMGWLYSDQSMSTLAIRH
LSEVTEKIPTHFKAIFLQAKEHYKLGEQSAASKLIDRGLQICRGIHNEEYTHHFSILKRVNENIPLEELEKIIQEGILYF
EQEELWEYVVEYAELFATKCRQFENHQKVSDYFHICYQARRKSIEKGVLK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 43859; Mature: 43728

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSVKGNEQLTSLLNDWYRSMLSQQVVKATNLKKKIDEKITKLSIESNQERQDQNLLLY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHH
YSLLEFRYTVLTDSLGIQQNSFDAISDYDMPTDHFLRFYYHFFKSIHSTFISSFTEAEEH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKLAEKILVNIPDEIEHAEFYYRIATFYHHTYNMLAAIEYANKSKAIFSKYEGYEVKTAF
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHH
CNSLLGGCCIYLKQYEQAEEYLHCAIELLQKNKEEDSLLYVKSTMGWLYSDQSMSTLAIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCCHHHHHHH
HLSEVTEKIPTHFKAIFLQAKEHYKLGEQSAASKLIDRGLQICRGIHNEEYTHHFSILKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VNENIPLEELEKIIQEGILYFEQEELWEYVVEYAELFATKCRQFENHQKVSDYFHICYQA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRKSIEKGVLK
HHHHHHHCCCC
>Mature Secondary Structure 
SVSVKGNEQLTSLLNDWYRSMLSQQVVKATNLKKKIDEKITKLSIESNQERQDQNLLLY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHH
YSLLEFRYTVLTDSLGIQQNSFDAISDYDMPTDHFLRFYYHFFKSIHSTFISSFTEAEEH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKLAEKILVNIPDEIEHAEFYYRIATFYHHTYNMLAAIEYANKSKAIFSKYEGYEVKTAF
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHH
CNSLLGGCCIYLKQYEQAEEYLHCAIELLQKNKEEDSLLYVKSTMGWLYSDQSMSTLAIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCCHHHHHHH
HLSEVTEKIPTHFKAIFLQAKEHYKLGEQSAASKLIDRGLQICRGIHNEEYTHHFSILKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VNENIPLEELEKIIQEGILYFEQEELWEYVVEYAELFATKCRQFENHQKVSDYFHICYQA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRKSIEKGVLK
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]