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The map label for this gene is yocD [H]

Identifier: 218904382

GI number: 218904382

Start: 3109566

End: 3110597

Strand: Direct

Name: yocD [H]

Synonym: BCAH820_3266

Alternate gene names: 218904382

Gene position: 3109566-3110597 (Clockwise)

Preceding gene: 218904380

Following gene: 218904390

Centisome position: 58.64

GC content: 37.6

Gene sequence:

>1032_bases
ATGTTAATAAAACCAAAGAGATTACAGGCAGGAGATGTTGTGGCAACAGTAAGTCCTTCATGGGGAGGCGCAGGTGATCC
TGAAATAAGATGGCGTTATGAACAAGGAGTAAAGAGATTAGAAAAGGTTTTCGGTCTTACGGTTATCCCAATGCCCAATA
GTTTAAAAGGTAGCGAATTCATTTATAACAACCCACAGGCTCGTGCGGAAGATTTAATGACAGCATTTAAAGATGCGCGC
GTGAAAGCAATTATTGCAAATATTGGCGGTGAAGATAGCATTCGTTTACTTCCTCATATAGATTTTAATGTGATACGTGA
AAACCCGAAAATTTTTATGGGATACTCTGACGTTACCGTCTCACATTTATTTTGCCATAAAGCAGGTCTTTCCTCTTTTT
ACGGTCCAGCAATTTTGACCGACTTTGCCGAGAATATAGAGATGGATCCATATACGGTTGAAATGGTAAATCGAACTCTC
TTTTCAAATGAAATGATTGGCGAGATTCAACCAGCTCATAAATGGACGAGTGAGCGTTTAGAATGGATCGAAATAAATAA
GGATACAAGACGTACGATGCAGCAAAACAACGGATATGAGTTACTTCAAGGCTCTACTACTGTACAAGGGCGCTTAATTG
GTGGTTGCATTGAAGTACTTGAATTTGCAAAAGGAACGGAACTTTGGCCTGAGAAAAAACATTGGGAGGATAGTATTATC
TTCTTTGAAACTTCTGAAGATCACCCAGAACCAAGTTATATAAAGTATTGGTTACGAAATTATGCAGCGCAAGGCATTCT
GAAAAAAGCAAAAGGAATCATTTTTGGTAAACCGAAAGATGAACAATACTATGAAGAATATAAACATGAAATACTGCAGG
TTATGAAGGAACATCATTTAGAAAATTTGCCGATTCTTTATAATTTAAATTTCGGCCATACTGAACCGAAGTTTATTTTA
CCTTACGGTGCGATGGCAGAAATTGATTGTGAAAATGGATCTTTCTCTATTTTAGAGAGTGGCGTGGAATAA

Upstream 100 bases:

>100_bases
AAACGGATTGATGATGAAGAAACTAATGACATGCATCATATTTTTCAATACTACAGTTTGATAATCGTAGTCCATTACAT
TATGTAGGAGCGGAGTTAAC

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATCAGTGGGGGTTCCATTCACATCGCTATCAAGTTAACATTTTGAAGTTCTCCCAGAACGAAAATTTA
TTCTTTTCATAGGTATTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MLIKPKRLQAGDVVATVSPSWGGAGDPEIRWRYEQGVKRLEKVFGLTVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDAR
VKAIIANIGGEDSIRLLPHIDFNVIRENPKIFMGYSDVTVSHLFCHKAGLSSFYGPAILTDFAENIEMDPYTVEMVNRTL
FSNEMIGEIQPAHKWTSERLEWIEINKDTRRTMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFIL
PYGAMAEIDCENGSFSILESGVE

Sequences:

>Translated_343_residues
MLIKPKRLQAGDVVATVSPSWGGAGDPEIRWRYEQGVKRLEKVFGLTVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDAR
VKAIIANIGGEDSIRLLPHIDFNVIRENPKIFMGYSDVTVSHLFCHKAGLSSFYGPAILTDFAENIEMDPYTVEMVNRTL
FSNEMIGEIQPAHKWTSERLEWIEINKDTRRTMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFIL
PYGAMAEIDCENGSFSILESGVE
>Mature_343_residues
MLIKPKRLQAGDVVATVSPSWGGAGDPEIRWRYEQGVKRLEKVFGLTVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDAR
VKAIIANIGGEDSIRLLPHIDFNVIRENPKIFMGYSDVTVSHLFCHKAGLSSFYGPAILTDFAENIEMDPYTVEMVNRTL
FSNEMIGEIQPAHKWTSERLEWIEINKDTRRTMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFIL
PYGAMAEIDCENGSFSILESGVE

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 39270; Mature: 39270

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKPKRLQAGDVVATVSPSWGGAGDPEIRWRYEQGVKRLEKVFGLTVIPMPNSLKGSEF
CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCE
IYNNPQARAEDLMTAFKDARVKAIIANIGGEDSIRLLPHIDFNVIRENPKIFMGYSDVTV
EECCCHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCEEEEECCCEEEEECCHHHH
SHLFCHKAGLSSFYGPAILTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAHKWTSERL
HHHHHHHHCCHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHCCCCCHHHHHHHCC
EWIEINKDTRRTMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
EEEEECCHHHHHHHCCCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCC
ENLPILYNLNFGHTEPKFILPYGAMAEIDCENGSFSILESGVE
CCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCCHHHHCCCC
>Mature Secondary Structure
MLIKPKRLQAGDVVATVSPSWGGAGDPEIRWRYEQGVKRLEKVFGLTVIPMPNSLKGSEF
CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCE
IYNNPQARAEDLMTAFKDARVKAIIANIGGEDSIRLLPHIDFNVIRENPKIFMGYSDVTV
EECCCHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCEEEEECCCEEEEECCHHHH
SHLFCHKAGLSSFYGPAILTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAHKWTSERL
HHHHHHHHCCHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHCCCCCHHHHHHHCC
EWIEINKDTRRTMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSII
EEEEECCHHHHHHHCCCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
FFETSEDHPEPSYIKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCC
ENLPILYNLNFGHTEPKFILPYGAMAEIDCENGSFSILESGVE
CCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]