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The map label for this gene is ybjS [H]

Identifier: 218904363

GI number: 218904363

Start: 3088952

End: 3089938

Strand: Reverse

Name: ybjS [H]

Synonym: BCAH820_3247

Alternate gene names: 218904363

Gene position: 3089938-3088952 (Counterclockwise)

Preceding gene: 218904364

Following gene: 218904362

Centisome position: 58.27

GC content: 36.78

Gene sequence:

>987_bases
ATGAAAATGCTAGTAACTGGTGGAACGGGCTTTCTAGGACAAAAACTCGCCTTTCGACTGAAGAATATGGGCTATGAAGT
AACGGCAACGGGAAGAAATAAAACAATCGGTAAGGTATTAGAACAAAATGGAATCAAGTTTGTTCATTGTCCTCTTGAAG
ACAGGGAGCGTGTGCTACAAGTTTGTAAAGATAAAGATTATATCTTTCATAGCGGTGCACTTTCTTCCCCTTGGGGCAAA
TATGAAGATTTTTATAAGGCAAATGTGTTAGGAACGAAACATATTATCGAGGGAAGTCAAAAGTACGGTATAAAACGCCT
TATCCACGTATCAACACCAAGCATTTATTTCTATTATGATGAGCGACAAAATGTAGTAGAAAATGCGAAACTTCCTGATA
CGTTTGTAAATCACTATGCAACAACGAAGTACATGGCTGAACAAGCTATTGATCAAGCTTTCGCGCATGGTTTACCAGTT
ATCACAATACGCCCGCGCGCTTTATTTGGACCAGGAGATAACGCGATTCTTCCGCGTCTTATTAAAGTATGTGAAAAAGG
GGCTTTGCCGAGAATTGGTACAGAAAATGTTCTTGTGGATATTACGTATGTTGAGAATGTTGTAGATGCTTTACTTCTTT
GTATGCATTCCCCAAAACATACATTAGGGCAAAAGTACAATATAACAAATGACGAACGTATCAATTTATATGAGGTCATA
GAAAATGTAATGAAGCGCCTTGATAAGGAAGTACGATATAAAAAAATTTCCTACAAAACTGCTTTTACACTAGCGGCTAT
ATTAGAAGGAATCTCAAAAACTATTTTATTCGGAAAAGAACCTATTCTTACAAAGTATACTGTTAGCGTCCTTTCAAAAA
GCCAGACGTTAAGTATTGATAAAGCTAAAGAAGAGCTAGGATATGCTCCAAAGGTCAGTATAGAAGAAGGAATTACAAAA
TTTGTAGACTGGTGGAAAATACAATGA

Upstream 100 bases:

>100_bases
AGTTTTTTAGCATGTACAAATTATGGCGTGAAAGTTATAAATATGAACGGACTATTTTAGAGCAAACAACATATGACATA
TCGTGGGATGGTGAAGATTT

Downstream 100 bases:

>100_bases
AAATCAAATCTTTAAAGCTATATGATACAGGATATTGCACACATCCAGAAAAAATCGCATACTCCAAGGGCAGTTGGAAA
CAAATCTGTTTTCCAGCAAC

Product: 3-beta hydroxysteroid dehydrogenase/isomerase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQVCKDKDYIFHSGALSSPWGK
YEDFYKANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYDERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPV
ITIRPRALFGPGDNAILPRLIKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSIDKAKEELGYAPKVSIEEGITK
FVDWWKIQ

Sequences:

>Translated_328_residues
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQVCKDKDYIFHSGALSSPWGK
YEDFYKANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYDERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPV
ITIRPRALFGPGDNAILPRLIKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSIDKAKEELGYAPKVSIEEGITK
FVDWWKIQ
>Mature_328_residues
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQVCKDKDYIFHSGALSSPWGK
YEDFYKANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYDERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPV
ITIRPRALFGPGDNAILPRLIKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSIDKAKEELGYAPKVSIEEGITK
FVDWWKIQ

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=335, Percent_Identity=28.955223880597, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI8393516, Length=335, Percent_Identity=28.955223880597, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI239745448, Length=330, Percent_Identity=26.3636363636364, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI310132178, Length=330, Percent_Identity=26.3636363636364, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI310113012, Length=330, Percent_Identity=26.3636363636364, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI116268111, Length=348, Percent_Identity=27.0114942528736, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI260763931, Length=352, Percent_Identity=23.0113636363636, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI4504509, Length=352, Percent_Identity=23.0113636363636, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI4504507, Length=363, Percent_Identity=25.068870523416, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081792, Length=336, Percent_Identity=35.4166666666667, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1788353, Length=362, Percent_Identity=24.3093922651934, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17509709, Length=358, Percent_Identity=23.463687150838, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17570557, Length=336, Percent_Identity=22.3214285714286, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI193211272, Length=342, Percent_Identity=25.1461988304094, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321437, Length=346, Percent_Identity=30.0578034682081, Blast_Score=119, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37205; Mature: 37205

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQ
CEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHH
VCKDKDYIFHSGALSSPWGKYEDFYKANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYD
HHCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHCCEEEEEECCCEEEEEEC
ERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPVITIRPRALFGPGDNAILPRL
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
IKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
HHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHH
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEHH
KAKEELGYAPKVSIEEGITKFVDWWKIQ
HHHHHCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQ
CEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHH
VCKDKDYIFHSGALSSPWGKYEDFYKANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYD
HHCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHCCEEEEEECCCEEEEEEC
ERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPVITIRPRALFGPGDNAILPRL
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
IKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
HHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHH
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEHH
KAKEELGYAPKVSIEEGITKFVDWWKIQ
HHHHHCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]