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The map label for this gene is yjhR [C]

Identifier: 218904332

GI number: 218904332

Start: 3054173

End: 3056452

Strand: Reverse

Name: yjhR [C]

Synonym: BCAH820_3216

Alternate gene names: 218904332

Gene position: 3056452-3054173 (Counterclockwise)

Preceding gene: 218904335

Following gene: 218904331

Centisome position: 57.64

GC content: 38.46

Gene sequence:

>2280_bases
ATGAATACACCTACTCAAACTCCTTCATTATCGGAAACGATGAAAGAGTGGCATTATGCATTAGCATATGAAATTAAACA
TTGGAAAACGATAGGTGGTAGTAAAATTTCTATCATGAACGGTCGTTTTTTATATACAGATTATGAAAGTACAGTATATG
TATTTCAGCTTATTTCGGAAGTAAGCTTACCTGAAGGTTCACCCATTCGAATTGAGTTCGATGGTGAGGAAGCGACAGGG
GAAGTATTATCTGTACATGGATTAGAAATAGAACTGAAATTAAATGATTATATACAAGGTGAAATACGAGAAGCTGTTTT
ATACAGTGAACCGTGGCAGCTTTTAGAGCAACTACAAGAGCGATTAAAAGAAGCGCGTAAAGATAAGCTAAAACGTAATC
GTATAAAGCGTCTTGTTGATGGGACGAGCAGTCCGAAACATATGGAGAAGATGAAGAATCCGAAAAATGAATTGGCGTAT
CGCGCGTTTTACAATCCGACAACGTACGTATGGGGACCGCCGGGAACAGGGAAGTCTTACAATTTATCACGTATTATTTC
GGCTCATTATCAAAAAGGAAAGTCGGTACTTGTGTTAGCTCATAGTAACGCCGCAGTGGACGTATTAATGAGTGAAGTAA
CGAAGCAAATTGAAAAGAAAAAGAAATGGACACCTGGCGAAATTGTTCGTTACGGTTATAGTCAACATGAACATATACGA
AATCATGAAACGCTTCTTGCATCGAAGTTAGTTGAAACGACGAACGGATCATGGGGTGAGGAAAGACTCTATTTAGAAGA
AACACGCCAAGAGCTTCGTGAAAAAATCTTATCGTATAAAGCAACATCTGCTGATAAGAAGCGTATGCAGGAGATTGAAA
GTGATCTTCGAAAACAGAGAGCGAAAATTAAAGAAGTAGAAAAAGAATACATTGAAAATGCGAAAGTGATTGGTGCGACT
TTATCGAAATGTGCTATTGATTCACTTATTTATGAGCGTACATTTGATTTAGTTGTCGTAGATGAAGTGAGTATGGCGTT
CGTTCCGCAAATTGCATTAGCTGCTTCACTTGGAAAACGTATCGTCGTTTGTGGTGACTTTTTACAGTTACCTCCAATTG
CGATGGCAAACCATGAACTCGTTCGCAAATGGCTTGGCGAAGATATGTTTTACCATGCTGGGATTGTGGAGTCTGTTAAT
AAATCAGAAGCACATCCGAACCTGTTTATGTTGCAGGAACAAAGACGTATGCATGCGGATATATCTAAGTTTACAAACTC
ATTTATTTATAAAAATAGGGTATATGATCATCCATCAGTTTCAGAACGTAAAGAACTTGCGCAATTGCAGCCGTTCGCAA
ATGAAGCAAGTGTTTTATTTGATACGAGCCAAATGGGAGCTTTTTCGTTAAAAGATGCTGCTTCAGGATCTCGTTTTAAC
ATTATGTCTGGTTTAGTAGCAATGCAAATGATGTTAATCGGACTGTTAGATGGTGTGCAATCAATTGGTATTGTGACGCC
TTACAGAGCGCAGTCTCGCTTTTTATCAACGTGTATTAGAGAGATGTTACAGAGAACGAAATATCAAAACATACCAGTTT
TAGCGGCGACAGTTCATAAATTCCAAGGATCTGAAAGAGATATGATGATCTTTGATACGGTTGACAGTTATCCACAAGAA
CGACCTGGCGTTTTATTCTTTGACCATAAAAATCATCGTCTCGTCAACGTTGCTGTGACAAGGGCGAGAGGGAAGTTCAT
TCAATTATCAGATTGTCATTATATGCGTAAAAACCTTTCGAGAAAACAAGCGTTGTCACAATTAACGGCTCATATAGAAC
GCCACGGAGATGTGTATGATCGCACGACATCAAGACAATTGTGGGAGCGAAAAATATCGAAACGATTACGTTGGTTTATG
GAAATGAATCTTGAGGAAACGAAAGGGCTATTAAAAGATATTTTAGCTGCAAAACGAAAAATCGTGATTTCACTTCCAAG
TACAAAACAAGTGGATAAACGAGTATGGCAAGCGTTAATGCGTACAAATGCGCAAATAACGGTGTATAGTGATGGACCAG
TTCCGTTAAAAAATGTAAAGTTACAAAGACAAAATAAAGCATTCCCGTTTATCGTAATCGATGATGAAATCTTTTGGGCA
GGGGCGCCCCTCACATCTCAAATGATGTTTGAAGGCAGTACAGAATTTCCATACGTATGTGCAAGACTGCAAGCACCTGA
GACAATTGGTGTATTAAAAGGATTTTTAGATATTCGGTAA

Upstream 100 bases:

>100_bases
GAAAATTAAGAAAATAAGCAAGATAAAAACCTTACAAATTTTAGCGTGTTATATGGTATAGTGAGAAAGTATGTTTGGGG
AGAAGGAAGGAGATTATACG

Downstream 100 bases:

>100_bases
ATTCGGATAGGAATTCCTTGACTTTTATTTGAAATGAACTTAGAATGAATGTAATTTAATATAATTTTATGAAAATTCTT
ATCACGAGAGGTGGAGGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGIVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGLLKDILAAKRKIVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Sequences:

>Translated_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGIVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGLLKDILAAKRKIVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
>Mature_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGIVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGLLKDILAAKRKIVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA2/NAM7 helicase family [H]

Homologues:

Organism=Homo sapiens, GI18375673, Length=426, Percent_Identity=27.4647887323944, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI119392094, Length=474, Percent_Identity=26.5822784810127, Blast_Score=99, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71981659, Length=467, Percent_Identity=25.2676659528908, Blast_Score=98, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17510163, Length=458, Percent_Identity=26.6375545851528, Blast_Score=93, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17533987, Length=353, Percent_Identity=23.7960339943343, Blast_Score=69, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17533985, Length=353, Percent_Identity=23.7960339943343, Blast_Score=69, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322835, Length=465, Percent_Identity=25.5913978494624, Blast_Score=93, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6323726, Length=467, Percent_Identity=24.1970021413276, Blast_Score=85, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6323462, Length=503, Percent_Identity=24.0556660039761, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI18859757, Length=454, Percent_Identity=27.3127753303965, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24660647, Length=455, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221330969, Length=455, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR004483 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87247; Mature: 87247

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAYRAFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCCCEEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGIVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEETKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
IVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAYRAFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCCCEEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGIVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEETKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
IVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]