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The map label for this gene is ybiR [C]

Identifier: 218904282

GI number: 218904282

Start: 3003722

End: 3004873

Strand: Direct

Name: ybiR [C]

Synonym: BCAH820_3166

Alternate gene names: 218904282

Gene position: 3003722-3004873 (Clockwise)

Preceding gene: 218904271

Following gene: 218904284

Centisome position: 56.65

GC content: 30.38

Gene sequence:

>1152_bases
GTGAAAGAAATAGTATTCGTTCAAAATAAAAAAAGACTACTTATGAAATTCAAATTTTTTAAAAAGGATATCGTACTTAC
CATTTCACTGATACTAGCAATTGTAAGCTGCATAATATATTCACCAAAGATTGAATATATTAACTTTGAAGTGTTAATTA
GCTTATTTAATCTAATGGTGGCCATTAAGGCCTTTGAACAGCTAAAGATATTAGACAAACTTGCCGTTGCCATTTTAAAT
AAATGCAATAACAGCAGATCAATATCTATTATTCTAATTTTGTTATGCTTTATTTGCTCCATGTTTGTAACAAATGATGT
CGCTCTCCTCACTTTTGTGCCAATAACACTTGTCATTAGTAAAAAAACACAAATGAACATGATGGATACAATCATCCTGC
AAACAATTGCGGCAAACATCGGCAGTAGCTTGATGCCTATGGGAAACCCACAAAATTTATACTTATATTCTTACTATGGA
ATTAAGCTCATCCCATTTTTAGGTTCAATCCTGCTTTTAGCTGTACTTGGAATCAGTTTGTTATTTATATTTACCCAAAA
ACTTCAAAAAACAGATTTAAAAATAGAACTACCTGTTATTACCGTGAAGAATCGAAAAAAAGCTACCATCTGGATTTTGA
TACTTATCACTATCATTGCATCCATTTTTGGTTTCATTAATTATTACATTGCGCTAATAGTTACATTGATGGCAGCATTT
ACGTTAGATAGAAACTTACTATTTAAGATCGATTATTTTCTTCTAATAACCTTTGTCTGTTTTTTTATTTTTATCGGAAA
CATTTCCCATTCCGATGCGCTGGAGACATTTGCTCGCGCTAATTTAAGAGGAGATACTTCAGTCTTCTTTAGTTCCATAT
TTTTGAGTCAATTGATTAGCAATTTTCCTACTTCAATTCTTCTATCAAACTTTACTTCTGATTGGAAAGCTTTATTACTA
GGAGTAAATATTGGAGGGCTTGGAACAATTATCGCATCTTTAGCCAGTGTAATTTCCTATAAACTATTCACTCAGGCCAA
TGGTAAAGAGAGCAAGGCATATTTAATTAAATTTAGCATTTACAACTTTTCATTTTTAATCATACTTACATGTATACAGT
ACTTTATCTTTAAATTTCTAAAAATTTTTTAA

Upstream 100 bases:

>100_bases
TAATTTTATTGCAATATAAGAAGATTTATTGAATATCTATTATTAAATGTATATTTCCTTTGCGTTTCATTTTACTAACA
TAGATTACAGGTGGTGTATT

Downstream 100 bases:

>100_bases
AAAATTGATTACTTTAGAAAAACCCAAATATCTCAGCATTCAATTGAGAAATTTGGGTTTTAATATAGGTATGTTTAAAG
AGATACAACAAAGTTACCAT

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MKEIVFVQNKKRLLMKFKFFKKDIVLTISLILAIVSCIIYSPKIEYINFEVLISLFNLMVAIKAFEQLKILDKLAVAILN
KCNNSRSISIILILLCFICSMFVTNDVALLTFVPITLVISKKTQMNMMDTIILQTIAANIGSSLMPMGNPQNLYLYSYYG
IKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATIWILILITIIASIFGFINYYIALIVTLMAAF
TLDRNLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSVFFSSIFLSQLISNFPTSILLSNFTSDWKALLL
GVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQYFIFKFLKIF

Sequences:

>Translated_383_residues
MKEIVFVQNKKRLLMKFKFFKKDIVLTISLILAIVSCIIYSPKIEYINFEVLISLFNLMVAIKAFEQLKILDKLAVAILN
KCNNSRSISIILILLCFICSMFVTNDVALLTFVPITLVISKKTQMNMMDTIILQTIAANIGSSLMPMGNPQNLYLYSYYG
IKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATIWILILITIIASIFGFINYYIALIVTLMAAF
TLDRNLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSVFFSSIFLSQLISNFPTSILLSNFTSDWKALLL
GVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQYFIFKFLKIF
>Mature_383_residues
MKEIVFVQNKKRLLMKFKFFKKDIVLTISLILAIVSCIIYSPKIEYINFEVLISLFNLMVAIKAFEQLKILDKLAVAILN
KCNNSRSISIILILLCFICSMFVTNDVALLTFVPITLVISKKTQMNMMDTIILQTIAANIGSSLMPMGNPQNLYLYSYYG
IKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATIWILILITIIASIFGFINYYIALIVTLMAAF
TLDRNLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSVFFSSIFLSQLISNFPTSILLSNFTSDWKALLL
GVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQYFIFKFLKIF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=375, Percent_Identity=25.8666666666667, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 43410; Mature: 43410

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIVFVQNKKRLLMKFKFFKKDIVLTISLILAIVSCIIYSPKIEYINFEVLISLFNLMV
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AIKAFEQLKILDKLAVAILNKCNNSRSISIILILLCFICSMFVTNDVALLTFVPITLVIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEE
KKTQMNMMDTIILQTIAANIGSSLMPMGNPQNLYLYSYYGIKLIPFLGSILLLAVLGISL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
LFIFTQKLQKTDLKIELPVITVKNRKKATIWILILITIIASIFGFINYYIALIVTLMAAF
HHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLDRNLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSVFFSSIFLSQLIS
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NFPTSILLSNFTSDWKALLLGVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSI
HCCHHHHHHHCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
YNFSFLIILTCIQYFIFKFLKIF
HHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKEIVFVQNKKRLLMKFKFFKKDIVLTISLILAIVSCIIYSPKIEYINFEVLISLFNLMV
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AIKAFEQLKILDKLAVAILNKCNNSRSISIILILLCFICSMFVTNDVALLTFVPITLVIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEE
KKTQMNMMDTIILQTIAANIGSSLMPMGNPQNLYLYSYYGIKLIPFLGSILLLAVLGISL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
LFIFTQKLQKTDLKIELPVITVKNRKKATIWILILITIIASIFGFINYYIALIVTLMAAF
HHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLDRNLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSVFFSSIFLSQLIS
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NFPTSILLSNFTSDWKALLLGVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSI
HCCHHHHHHHCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
YNFSFLIILTCIQYFIFKFLKIF
HHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]