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The map label for this gene is pocR [H]

Identifier: 218904264

GI number: 218904264

Start: 2984111

End: 2985340

Strand: Reverse

Name: pocR [H]

Synonym: BCAH820_3148

Alternate gene names: 218904264

Gene position: 2985340-2984111 (Counterclockwise)

Preceding gene: 218904266

Following gene: 218904263

Centisome position: 56.3

GC content: 30.0

Gene sequence:

>1230_bases
ATGAATACTTCTATCGATATACAACACTTGTGTGATCTTGCACATAAAGCATTTAATGCCCCTGTACATATTTTATCTGC
AGACAGAAAGATTTTATATCATTCTACATCTGATAATGTTTGTAGTCCTTTTTATTCTTCAAAAGAAGAACATCTTAGTG
ATATTTATCAAGAAAACGATCCCTTTAACTTGCCACTTTTCCGAAGTAACAACTATCTTGAAAATTTTGTTCTAATTCAT
ATAGAAAATCATGATGATATTAAAGGGACTATTATAATCGGTCCTACTATACATCCAAAAGATTCAGATGATATGATCAT
AAAATTTCAGAAAGAATTTAAAGCAAATGATAACATTCAAGAAAGACTTGCCTATTATCAGTGTTTATCTGAGATTAAAA
AAACTACATTAATTGATATGGGAATTTTATTACATTACATGATTTTTAATGAAAAGTTAGATGTAGATATTGTCTTGGAA
AAAAATAAAGTACTAGAGGAAATTCCTAATAAAAATGTGAAACCTGATTTATATATTTTAAAACGTCGACAAAACAAACC
TAAAACGCACAATATGGCATTAGTAAATGATTTCTTTTCGACTATTAAAGAAGGGAATAAAAAAAAGTTAATACAGTATA
TGTATGCGGTTTCGCAAGAAGATGTTGAGCTTATGCTAATAGAGGATCCGCTCAGGAATCAAAAAAACCTTGGAATTATT
GCGATTACCTTAGCCACTCGATATGCAATAGAAGGAAACCTGCCACCAGATATTGCTTTTGCTCATAGTATTTTATATAT
ACAAACCCTGGAACAATTAGATAATGTAGAATCTGTAAAGCGATTGTCAGGGGATGCTTTACGTACTTTTGCAGATCGTG
TGAAAGAATACAATGCAAAAAAGTATTCTTACGCGGTTACTACATGTATAAAACATATTAATAAAAATGTTTACGATGGA
ATATCTCTGAATGAACTTGCTAATCATTTAGAAATTACGCCTACTTATCTGTCTAAACTATTTAAAAAAGAAATGGGAAT
TACTTTAAGCGAATATATTCAAAGGGAACGAGTGGAAGAAGCAAAGAAATTATTAACACTCACTACTTATTCGTTATCAG
ATATCTGTGCGTGGCTTAACTTTAATGACCAAAGTTATTTTATAAGAGTTTTCAAAAAAAACACTAGCATGACTCCTAGG
CAGTACCGTGAAAAATATACAGTAATATAA

Upstream 100 bases:

>100_bases
TATTTTGTTATGAATTGTACTAATTTGATATTTTATAGTATTATTTGTCGTGAATTATATCTAACAGAATATATTTTATG
GATCTATAAAGGAGAATGTA

Downstream 100 bases:

>100_bases
GCTTGTTATCTGCTGTCTCCAATGTAAAGACTTAAACATGGGTATAAGTATCCCAAAAAATGAAAATTCACTAACCATTA
TTTTGCTAAAGAAAACAAAA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLSDIYQENDPFNLPLFRSNNYLENFVLIH
IENHDDIKGTIIIGPTIHPKDSDDMIIKFQKEFKANDNIQERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLE
KNKVLEEIPNKNVKPDLYILKRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAKKYSYAVTTCIKHINKNVYDG
ISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEEAKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKNTSMTPR
QYREKYTVI

Sequences:

>Translated_409_residues
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLSDIYQENDPFNLPLFRSNNYLENFVLIH
IENHDDIKGTIIIGPTIHPKDSDDMIIKFQKEFKANDNIQERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLE
KNKVLEEIPNKNVKPDLYILKRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAKKYSYAVTTCIKHINKNVYDG
ISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEEAKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKNTSMTPR
QYREKYTVI
>Mature_409_residues
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLSDIYQENDPFNLPLFRSNNYLENFVLIH
IENHDDIKGTIIIGPTIHPKDSDDMIIKFQKEFKANDNIQERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLE
KNKVLEEIPNKNVKPDLYILKRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAKKYSYAVTTCIKHINKNVYDG
ISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEEAKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKNTSMTPR
QYREKYTVI

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=99, Percent_Identity=31.3131313131313, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790391, Length=95, Percent_Identity=33.6842105263158, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789993, Length=100, Percent_Identity=33, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 47652; Mature: 47652

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLSDIYQEND
CCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
PFNLPLFRSNNYLENFVLIHIENHDDIKGTIIIGPTIHPKDSDDMIIKFQKEFKANDNIQ
CCCCEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEHHCCCCCCHH
ERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLEKNKVLEEIPNKNVKPDLYIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCCCCEEE
KRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
EECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEE
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAK
EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
KYSYAVTTCIKHINKNVYDGISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEE
HHHHHHHHHHHHHCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKNTSMTPRQYREKYTVI
HHHHHHHHEECHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLSDIYQEND
CCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
PFNLPLFRSNNYLENFVLIHIENHDDIKGTIIIGPTIHPKDSDDMIIKFQKEFKANDNIQ
CCCCEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEHHCCCCCCHH
ERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLEKNKVLEEIPNKNVKPDLYIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCCCCEEE
KRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
EECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEE
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAK
EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
KYSYAVTTCIKHINKNVYDGISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEE
HHHHHHHHHHHHHCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKNTSMTPRQYREKYTVI
HHHHHHHHEECHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]