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The map label for this gene is ydbM [H]

Identifier: 218904225

GI number: 218904225

Start: 2942506

End: 2943654

Strand: Reverse

Name: ydbM [H]

Synonym: BCAH820_3109

Alternate gene names: 218904225

Gene position: 2943654-2942506 (Counterclockwise)

Preceding gene: 218904226

Following gene: 218904223

Centisome position: 55.51

GC content: 39.69

Gene sequence:

>1149_bases
ATGGCACTCTCATTTGTTGAAACAGAAAAACAATCTTTTATTATTGAACAAATAAATAAATTGATTCCGAAGTTCATGGA
AAGGGAGCATCAACTAAGTGAATTAGGATCATTTCCGTATGAAAATATAAATGATTTAAAAGATATCGGATATACAAAAT
TAACGTTACCGAAGGAATTTGGTGGTAGTGAGATTTCTTTATATGACTTCGTTCTATTTCAAGAGAAAATTGCGGAAGGC
TGCGGAGCTACTGCATTATCGATTGGCTGGCATCTTGGTATTGTGAAAGAGCTGGCGGAAAATCGCTCTTGGAATGATGA
GATGTTCAAATGGTTTTGCGAAGAAGTGCGTAATGGGGCGCTCTTTAACAGGGCAGCAACAGAACCGAAAACAGGGAGTC
CGACGCGTGGCGGTAAACCAGAAACAATAGCGGTTCAACAAGGCGAGAAGTGGATTATAAATGGAAGGAAAACTTTTACA
ACGATGGCGCCAGTACTTGATTATTTTATTATTTCAGCGAGTATGGAAGGCCGTGAAGAAGTTGGTGAGTTTGTTATTCC
AAGAAATACACTCGGTGTATCCATTGAAGAAACGTGGGATAGCGTTGCGATGCGAGGCACTGCTAGTCACGACCTTGTCT
TACAAAATGTAGAGATAGAAAACCGCTTTTTTACAGATGTAAAGGGCGGGAAAGTAAAACAAAAGGGTGTTGGTTGGTTG
CTACATATACCAGCATGTTATTTAGGAATTGCACAATCAGCAAGAAATTATGCAGTTCAATTTGCGGGATCATACAAGCC
GAATAGTTTAAACCATTCTATTAGTTTATTACCGAATGTTAGAAGATTAGTTGGAGAATTAGAACTCGAGCTTATGCAAG
CTCGCGTCTTTTTATATCAAATTGCGAAAAAATATGATGAGGCAGAAGATAAACTGTCACTGCAAGCAGAATTAGCGGCA
GTGAAATACGCCGTAACAAATGCGGCGATATCCATAGTGGATAAATCAATGCGCATCGTAGGAGCAAAAAGTTTATCAGA
AAAAAATCCGCTTCATCGTTATTATTTAAACGTTAGGGCAGGACTACACAATCCGCCGATGGATGATGCAACACTATCTA
TGTTGGCGGATGCGGCGTTTCGATCGTAG

Upstream 100 bases:

>100_bases
TGTATTTTTATCGGAATAGTGAAACAATAGAGAGGTAGCTTCATATAATCATAATGACAAAATGAACGGTTCATGAATCG
AACATAAAGGAGATTATAGT

Downstream 100 bases:

>100_bases
TTTTTTAGCTTGAACTTTATTATTTAAGTGAAATATAGTTATTTTGAAAGCACGTGTTTGATTAGTAATCGAACGCGTGC
TTTTTATGTGCAGGAACGTA

Product: putative acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSEISLYDFVLFQEKIAEG
CGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFT
TMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGVGWL
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAA
VKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS

Sequences:

>Translated_382_residues
MALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSEISLYDFVLFQEKIAEG
CGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFT
TMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGVGWL
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAA
VKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS
>Mature_381_residues
ALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSEISLYDFVLFQEKIAEGC
GATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTT
MAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGVGWLL
HIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAAV
KYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=339, Percent_Identity=22.1238938053097, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI226958412, Length=351, Percent_Identity=22.2222222222222, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI226958414, Length=324, Percent_Identity=21.9135802469136, Blast_Score=76, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17538396, Length=320, Percent_Identity=24.375, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17508101, Length=358, Percent_Identity=20.391061452514, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17534899, Length=315, Percent_Identity=21.2698412698413, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356377, Length=343, Percent_Identity=23.0320699708455, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24646207, Length=349, Percent_Identity=24.3553008595989, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21355753, Length=319, Percent_Identity=22.884012539185, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24666513, Length=370, Percent_Identity=23.2432432432432, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42798; Mature: 42667

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCHHC
GGSEISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGA
CCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
LFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTTMAPVLDYFIISASMEGREE
EECCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHH
VGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGVGWL
HCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEECCCCCEEECCCCCEE
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQ
EEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
GLHNPPMDDATLSMLADAAFRS
CCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCHHC
GGSEISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRNGA
CCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
LFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTTMAPVLDYFIISASMEGREE
EECCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHH
VGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGVGWL
HCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEECCCCCEEECCCCCEE
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQ
EEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
GLHNPPMDDATLSMLADAAFRS
CCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]