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The map label for this gene is yocH [H]

Identifier: 218904080

GI number: 218904080

Start: 2801317

End: 2802783

Strand: Reverse

Name: yocH [H]

Synonym: BCAH820_2964

Alternate gene names: 218904080

Gene position: 2802783-2801317 (Counterclockwise)

Preceding gene: 218904081

Following gene: 218904078

Centisome position: 52.86

GC content: 39.4

Gene sequence:

>1467_bases
ATGAAAAAAGTAATTGGCGCAGCAACAGCAACTGTTTTCGGATTGGGAGCATTTACTACAACTGCTACTGCAGAAACGAT
CGTAACAGCAGATGTACTCAACGTACGTGAAAAACCGACTACGGAATCAAAAGTGGTCGAAAAAGTAAAAAACGGGGAAG
AGTTAAAAGTCATCAATACCGAAGATGGCTGGTCAAAAATTGAGTTAAATGGTAAAGAAGTATTTGTAAGCTCGGAGTTT
ACTAAAGATATTTACCATGTAACAGCAGATTTGTTAAATGTACGTTCTGAATCAAACACAGAATCAAAAATTCTTGGCAG
ACTGAAAAAAGATGATGTAATTGAATCAACGAACCAAGTAAAAGACGGATGGCTACAATTTGAGTATAAGGGAAAAACAG
CTTATGTAAATGTTTCTTTCTTATCAAGTAAAGCACCAATTGAAAAAAAGGCTGACGAGAAAACGAAGCAAGTAGCGAAA
GTACAAAAATCGGTTAAAGCTAAGGAAGAAGCTAAAACACAGAAGATAACAAAGGCAAAAGAAACAATAAAACCTAAGGA
AGAAGTGAAAGTCCAAGAAGTAGTAAAACCTAAGGAAGAAGTGAAAGTCCAAGAAGTAGTAAAGCCTAAGGAAGAAGTGA
AAGTCCAAGAAGTAGCGAAACCTAAGGAAGAAGTGAAAGTCCAAGAAGTAGCGAAACCTAAGGAAGAAGTGAAAGTCCAA
GAAGTAGTAAAACCTAAGGAAGAAGTGAAAGTCCAAGAAGTAGCCAAAGCTAAGGAAGAAGCGAAAGCACAGGAAATCGC
AAAGGCTAAGGAAGAAGCAAAAGCACAAGAGATAGCCAAAGCTAAGGAAGAAGCAAAGGCACAAGAGATAGCCAAAGCTA
AGGAAGAAGCAAAGGCACAAGAGATAGCGAAGGCTAAGGAAGAAGCAAAAGCGCAAGAAATAGCCAAAGCTAAGGAAGAA
GCAAAAGCACAAGAGATAGCGAAGGCTAAGGAAGAAGCAAAAGCGCAAGAAATAGCCAAAGCTAAGGAAGAGGCAAAAGC
ACGAGAGATAGCGAAGGCTAAGGAAGAAGCAAAAGCGCAAGAAATAGCCAAAGCTAAGGAAGAGGCAAAAGCACGAGAAG
CACTAAAGGCAAAAGAAGAGTCTAAAAATAACGCGCAGTCTGCTAAACGTGAATTAACGGTGGTGGCGACAGCATATACT
GCTGATCCGAGTGAGAATGGTACATATGGTGGACGCGTTTTAACTGCGATGGGGCATGATTTAACGGCTAATCCGAATAT
GAGAATTATCGCAGTAGATCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTATGGAGAAGCGATAGCTG
GAGATACCGGAAGTGCAATTAAAGGTAATCGCATTGATGTATTAATGGGTTCAAAAAGTAAAGCGATGAATTGGGGAAGA
CAAACTGTTAAAGTGAAGATTTTATAA

Upstream 100 bases:

>100_bases
TCGTATTAATATGTTGTTGCAAATGTTTTGGTATAATATTAAATTTTATTATTTTTACGAAAGCATTTGATAGAATTCAA
AAAATATAATGGAGGTTAAT

Downstream 100 bases:

>100_bases
TCAATCTAGAATATAACATAATGAAAATAAGACTGACATATTCTGTCGGTCTTATTTTCGTACCATAACATCATTAAGAA
TCGCATCAAATATATCTTTT

Product: enterotoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINTEDGWSKIELNGKEVFVSSEF
TKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTKQVAK
VQKSVKAKEEAKTQKITKAKETIKPKEEVKVQEVVKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQ
EVVKPKEEVKVQEVAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEE
AKAQEIAKAKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEEAKAREALKAKEESKNNAQSAKRELTVVATAYT
ADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGR
QTVKVKIL

Sequences:

>Translated_488_residues
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINTEDGWSKIELNGKEVFVSSEF
TKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTKQVAK
VQKSVKAKEEAKTQKITKAKETIKPKEEVKVQEVVKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQ
EVVKPKEEVKVQEVAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEE
AKAQEIAKAKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEEAKAREALKAKEESKNNAQSAKRELTVVATAYT
ADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGR
QTVKVKIL
>Mature_488_residues
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINTEDGWSKIELNGKEVFVSSEF
TKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTKQVAK
VQKSVKAKEEAKTQKITKAKETIKPKEEVKVQEVVKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQ
EVVKPKEEVKVQEVAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEE
AKAQEIAKAKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEEAKAREALKAKEESKNNAQSAKRELTVVATAYT
ADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGR
QTVKVKIL

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 53538; Mature: 53538

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEC
EDGWSKIELNGKEVFVSSEFTKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQV
CCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
KDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTKQVAKVQKSVKAKEEAKTQKITKAK
CCCEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETIKPKEEVKVQEVVKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQ
HHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
EVVKPKEEVKVQEVAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIAKAKEEAKAREALKAKEESKNNAQSAKRELTVVATAYTADPSENGTYGGRVLTAMGHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCEEEEECCCC
LTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGR
CCCCCCEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCC
QTVKVKIL
EEEEEEEC
>Mature Secondary Structure
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEC
EDGWSKIELNGKEVFVSSEFTKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQV
CCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
KDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTKQVAKVQKSVKAKEEAKTQKITKAK
CCCEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETIKPKEEVKVQEVVKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQ
HHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
EVVKPKEEVKVQEVAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIAKAKEEAKAREALKAKEESKNNAQSAKRELTVVATAYTADPSENGTYGGRVLTAMGHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCEEEEECCCC
LTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGR
CCCCCCEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCC
QTVKVKIL
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]