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The map label for this gene is yabJ [H]

Identifier: 218903822

GI number: 218903822

Start: 2574606

End: 2575001

Strand: Direct

Name: yabJ [H]

Synonym: BCAH820_2706

Alternate gene names: 218903822

Gene position: 2574606-2575001 (Clockwise)

Preceding gene: 218903821

Following gene: 218903828

Centisome position: 48.55

GC content: 31.82

Gene sequence:

>396_bases
ATGCAAAAGAAATTTATCAATCCAAAAACGATGCCACCAACTTTTGGATACTCACATGTAGTGGAAGTTAGTAACGCTAA
ACGAACGATTTACATATCTGGACAAGTAGCAATTAATATAGACGGTCAAATTGTTGGAATTAATGATTTAGCTACACAAA
CACGACAAGTATTTGAAAATATTAAAATCGCATTAGAAGCGTCAGACTTAAATTTCAATGATGTAGTAAAATTAACATTT
TTCTTAACAGACATTTCTCAAATGGCCGTTGTTAGAGATATTCGAGATCAATACATTGACACTAATAATCCACCAGCAAG
TTCAGCTGTCGAAGTTAGAAAGTTAATTAACGATAACTTATTAATTGAAATCGAAGCAATTGCTGTAGCAAACTAA

Upstream 100 bases:

>100_bases
ATATACTTTTACAAATGTAGCAGCTGAATGGTAAATAAGGGATAATCTGAATTTAAAATCTAATATAAAGAAAATAAGAT
ATTCAAAGAGGAGAAGAGCC

Downstream 100 bases:

>100_bases
TTTTAAAAACTTATTATGAATCATATCCATGCAATTCGTTTAATGTGTTCATTTAAAACGAATTGCATTTTTATTGTCTT
AAATATAATTTATATCTGGA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MQKKFINPKTMPPTFGYSHVVEVSNAKRTIYISGQVAINIDGQIVGINDLATQTRQVFENIKIALEASDLNFNDVVKLTF
FLTDISQMAVVRDIRDQYIDTNNPPASSAVEVRKLINDNLLIEIEAIAVAN

Sequences:

>Translated_131_residues
MQKKFINPKTMPPTFGYSHVVEVSNAKRTIYISGQVAINIDGQIVGINDLATQTRQVFENIKIALEASDLNFNDVVKLTF
FLTDISQMAVVRDIRDQYIDTNNPPASSAVEVRKLINDNLLIEIEAIAVAN
>Mature_131_residues
MQKKFINPKTMPPTFGYSHVVEVSNAKRTIYISGQVAINIDGQIVGINDLATQTRQVFENIKIALEASDLNFNDVVKLTF
FLTDISQMAVVRDIRDQYIDTNNPPASSAVEVRKLINDNLLIEIEAIAVAN

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87082396, Length=130, Percent_Identity=36.9230769230769, Blast_Score=63, Evalue=7e-12,
Organism=Escherichia coli, GI87082213, Length=131, Percent_Identity=32.0610687022901, Blast_Score=59, Evalue=8e-11,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14595; Mature: 14595

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKFINPKTMPPTFGYSHVVEVSNAKRTIYISGQVAINIDGQIVGINDLATQTRQVFEN
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECEEEEEECCEEEECHHHHHHHHHHHHH
IKIALEASDLNFNDVVKLTFFLTDISQMAVVRDIRDQYIDTNNPPASSAVEVRKLINDNL
EEEEEEECCCCHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCE
LIEIEAIAVAN
EEEEEEEEECC
>Mature Secondary Structure
MQKKFINPKTMPPTFGYSHVVEVSNAKRTIYISGQVAINIDGQIVGINDLATQTRQVFEN
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECEEEEEECCEEEECHHHHHHHHHHHHH
IKIALEASDLNFNDVVKLTFFLTDISQMAVVRDIRDQYIDTNNPPASSAVEVRKLINDNL
EEEEEEECCCCHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCE
LIEIEAIAVAN
EEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]