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The map label for this gene is ydfD [H]

Identifier: 218903801

GI number: 218903801

Start: 2556295

End: 2557728

Strand: Reverse

Name: ydfD [H]

Synonym: BCAH820_2685

Alternate gene names: 218903801

Gene position: 2557728-2556295 (Counterclockwise)

Preceding gene: 218903819

Following gene: 218903799

Centisome position: 48.23

GC content: 34.4

Gene sequence:

>1434_bases
ATGACAACTAATAAAAWAACGCCTAAGTATCGGCAAATAGTAGACTATATGAAAGAAAAAATTGAAAATGGAGAATGGCC
AATTGGAAGTAAGACCCCTAGTCAAAGGCAGTTAGCGAAATTATTTCAAGTAAATCGTAGCACTGTAATAACTGCACTAG
ATGAACTTATGGCTGATGGATTGATTCAAGGGAAAATTGGAGCAGGAACAATTGTAACGAATAATACATGGTCATTATTA
GCGACGAATCCCCCGCCCGATTGGAGTGAATATGTAAAAGCCGGTATTCATAAACCAAGCAAGTTAATGGTACGAGAAAT
AAATAAAGCAGAATCAAATAACAAACTTATCCATCTTAGTAAAGGCGAACTTTCTCCTCATCTTTTTCCATTAGAAACGA
TGCAGTCCATTATGAAGAAAGTAAGTGAGGAATTAGACTATTTTGGATATGAGGAACAAAAAGGGTTTTATCCGTTACGT
GAAGCAATAAGTAAATACGTAAAATCATTTGGAATACATGCATCACCAAGTTCCATATTAATCGTCTCGGGTGCATTACA
AGCATTGCAATTAATATCAATTGGTCTTTTACATAGAGAGTCAACCATTTTACTTGAACAACCTTCTTACTTATATTCAC
TTCATGTATTTCAATCAGCAAATATAAATCTATCTGGTATATCTATGGATCCTCACGGTATATTACCTAACGAGTTATTA
AAACGAATTAAATACAGTCAGAAGAAAAACATTTTATATTCAATTCCTTGTTTTCAAAATCCAACAGGCATATTAATGTC
TAAAGAGCGGAGAAAAGAAATATTAAAAATATGTGAAAAGGAACAGTTACCTATTATTGAAGATGATATTTACCGCGAGT
TATGGATTGATGCACCGCCCCCAGCTCCTTTAAAATCAAGGGATAAACATGGACATGTATTATATATCGGTAGTCTCTCT
AAGACGCTTACCCCAGGACTTAGAATTGGATGGGTTATCGGTCCAGAACCAGTTATTGATAGATTATCAGATATAAAAAT
GCAAACAGATTATGGATCAAGCTCTTTATCCCAAAGAGTTGCTGCTGAATGGATAAATAAAGGATTTTATGAGGAACATG
TAGCGAACGTAAGAATTAAACTAAAAGAACGAAGACAAATAATGATACGAGCTTTACATAAGTATTGTGCAGATATTGCC
ACCTGGGATATACCTAGTGGTGGATTTTTTATATGGCTGAAGGTAATACCTAGCATTCCGATGAAGAAATTATTTTCAGA
GGCACTATCAAAAGGAGTTCTTTTAAATCCAGGACGTATATATGAAGAAGAATCAGACCGGTATATTCGTTTATCATATG
GATATGCTTCTTCAGAGCAAATGACTAACGGGATTAAATTGTTGAGTGAATTAATTCGTAAGCTAACGGCATAA

Upstream 100 bases:

>100_bases
CTTCCCATCATATTTAATAGTTGATACAATGTCTTCAACCAGTTTTTTATCATAAAAACCAACCACTTGGCATTTTTCGA
ATGAACGAAGGAGTTTTTTG

Downstream 100 bases:

>100_bases
CAAAAACTCCTCTTTTTCTATAGAGGAGTTTTTATGTATCTTATTTACCACAATCTCATTTCCTGCCCTAATAAAATAAG
TGCTTCATAAGGATCCCCGT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MTTNKXTPKYRQIVDYMKEKIENGEWPIGSKTPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLL
ATNPPPDWSEYVKAGIHKPSKLMVREINKAESNNKLIHLSKGELSPHLFPLETMQSIMKKVSEELDYFGYEEQKGFYPLR
EAISKYVKSFGIHASPSSILIVSGALQALQLISIGLLHRESTILLEQPSYLYSLHVFQSANINLSGISMDPHGILPNELL
KRIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRELWIDAPPPAPLKSRDKHGHVLYIGSLS
KTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEHVANVRIKLKERRQIMIRALHKYCADIA
TWDIPSGGFFIWLKVIPSIPMKKLFSEALSKGVLLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKLTA

Sequences:

>Translated_477_residues
MTTNKXTPKYRQIVDYMKEKIENGEWPIGSKTPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLL
ATNPPPDWSEYVKAGIHKPSKLMVREINKAESNNKLIHLSKGELSPHLFPLETMQSIMKKVSEELDYFGYEEQKGFYPLR
EAISKYVKSFGIHASPSSILIVSGALQALQLISIGLLHRESTILLEQPSYLYSLHVFQSANINLSGISMDPHGILPNELL
KRIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRELWIDAPPPAPLKSRDKHGHVLYIGSLS
KTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEHVANVRIKLKERRQIMIRALHKYCADIA
TWDIPSGGFFIWLKVIPSIPMKKLFSEALSKGVLLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKLTA
>Mature_476_residues
TTNKXTPKYRQIVDYMKEKIENGEWPIGSKTPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLLA
TNPPPDWSEYVKAGIHKPSKLMVREINKAESNNKLIHLSKGELSPHLFPLETMQSIMKKVSEELDYFGYEEQKGFYPLRE
AISKYVKSFGIHASPSSILIVSGALQALQLISIGLLHRESTILLEQPSYLYSLHVFQSANINLSGISMDPHGILPNELLK
RIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRELWIDAPPPAPLKSRDKHGHVLYIGSLSK
TLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEHVANVRIKLKERRQIMIRALHKYCADIAT
WDIPSGGFFIWLKVIPSIPMKKLFSEALSKGVLLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKLTA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=394, Percent_Identity=29.1878172588832, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI33469970, Length=394, Percent_Identity=29.1878172588832, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI4507369, Length=262, Percent_Identity=27.0992366412214, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI1787710, Length=471, Percent_Identity=24.203821656051, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1790797, Length=481, Percent_Identity=25.987525987526, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI1788722, Length=329, Percent_Identity=24.0121580547112, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321236, Length=361, Percent_Identity=24.6537396121884, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6321000, Length=271, Percent_Identity=26.9372693726937, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321929, Length=474, Percent_Identity=19.831223628692, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356535, Length=355, Percent_Identity=23.6619718309859, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI18859735, Length=209, Percent_Identity=25.8373205741627, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54083; Mature: 53951

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNKXTPKYRQIVDYMKEKIENGEWPIGSKTPSQRQLAKLFQVNRSTVITALDELMADG
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCC
LIQGKIGAGTIVTNNTWSLLATNPPPDWSEYVKAGIHKPSKLMVREINKAESNNKLIHLS
CEECCCCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE
KGELSPHLFPLETMQSIMKKVSEELDYFGYEEQKGFYPLREAISKYVKSFGIHASPSSIL
CCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEE
IVSGALQALQLISIGLLHRESTILLEQPSYLYSLHVFQSANINLSGISMDPHGILPNELL
EEHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHH
KRIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRELWIDAPP
HHHHHHHHCCEEEECCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
PAPLKSRDKHGHVLYIGSLSKTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRV
CCCCCCCCCCCCEEEEECCHHHCCCCCEEEEEECCHHHHHHHHHCEEECCCCCHHHHHHH
AAEWINKGFYEEHVANVRIKLKERRQIMIRALHKYCADIATWDIPSGGFFIWLKVIPSIP
HHHHHHCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCC
MKKLFSEALSKGVLLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKLTA
HHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTNKXTPKYRQIVDYMKEKIENGEWPIGSKTPSQRQLAKLFQVNRSTVITALDELMADG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCC
LIQGKIGAGTIVTNNTWSLLATNPPPDWSEYVKAGIHKPSKLMVREINKAESNNKLIHLS
CEECCCCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE
KGELSPHLFPLETMQSIMKKVSEELDYFGYEEQKGFYPLREAISKYVKSFGIHASPSSIL
CCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEE
IVSGALQALQLISIGLLHRESTILLEQPSYLYSLHVFQSANINLSGISMDPHGILPNELL
EEHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHH
KRIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRELWIDAPP
HHHHHHHHCCEEEECCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
PAPLKSRDKHGHVLYIGSLSKTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRV
CCCCCCCCCCCCEEEEECCHHHCCCCCEEEEEECCHHHHHHHHHCEEECCCCCHHHHHHH
AAEWINKGFYEEHVANVRIKLKERRQIMIRALHKYCADIATWDIPSGGFFIWLKVIPSIP
HHHHHHCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCC
MKKLFSEALSKGVLLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKLTA
HHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]