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The map label for this gene is rapF [H]

Identifier: 218903654

GI number: 218903654

Start: 2410483

End: 2411583

Strand: Reverse

Name: rapF [H]

Synonym: BCAH820_2538

Alternate gene names: 218903654

Gene position: 2411583-2410483 (Counterclockwise)

Preceding gene: 218903656

Following gene: 218903653

Centisome position: 45.48

GC content: 28.7

Gene sequence:

>1101_bases
ATGACTGTTCAAGAAAAAAGTAATAAACAATTGATGGAATTATTACATGAATGGTATGAAGAAATTCGTTTATATCATGT
AGTAGAAGCAAAACAAACATATCTAAAAGTAAAAGAAAGTTTAAAAGGAATAGAAACAGACCAATATGTATCATTCTATT
ATTCCCTGCTGAATTTTAGATATAAAGTTTTGGTAGATGGAATGAATATTACAAAAGATTCTTTTAATCAAATAGAAAAA
CTACCTCATATTAAAGATGAATTTTCATTTTTAGCTTACTATTATTATTTCTTTAAGGCAATCCACTCTACAATTATAGC
AAATTATACTGAGGCAAAAACATACTATGAAAAGGCGGAAGGACTTTTAAAAGGTATACCTGACGAAATAGAAAAAGCTG
AGTTTGAGTATAGATTTTCAACATACTGTTATCAATCTTATCAACCATTTGAAGCGATTCAACATGCAGTAAAAGCCAAA
GAAATATATTTGAATCATGTAGGCTATAAAATTAATATTGCTTTATGCGACAATGTATATGGACTGGCTTGTATAGATCT
AAGAGAATTTGAAAGAGCGGAAGAATGTCTCAATATGGTTATTGATATTTTTAAGAAGTATGATGAAGAACAATTATTAT
TACGAGTACGATCCAATTTAGGCTGGTTATATAATATTCAAGATTTATATCCATTGGCGATTAGACAGAGTTCTGAAATT
ATAAATACCATACCGAACCATTTTAAAGCATTATTTGTCTTAGCAAGAGCATATTATAAGTTAGAAGGCATTGAAACAGC
AAGAGCATATATCGAGCAAGGAATGAAATATACAAATGAATCAGGAAATGAGGAATATAAACACCGTTTCGCAGTTTTAA
ATGAACTAATTACAGAACTGCCTAGAATTAAACTAGAAAAAGTAGTTACTGATGCCATTTCTTATTTTGAAAAAGAGGAA
ATGTGGGATTGTGTAAAAGAATATGCAGAGATTTTAGCACTGCAATTTTACGAAACAAATAATCATGTTAAAGCGAGTAA
GTATTTCTATATTAGTAATAATGCTGATAAGAAACATTTAAGAAAAGGAGCGTTAAAGTAA

Upstream 100 bases:

>100_bases
AGAATATTCTGTATTTTTATGAAAAAAATCATGATTAAATTTAATTTATCGAATTCCTGTTATTATCAGAATAAGCCTTT
ACAGAGAAATGGGGGATATT

Downstream 100 bases:

>100_bases
TGAAAAAAATAAAAAAATTGTTATTCAGTACGATAATAGTAAGTACATTAGCATGTAGCATGATTAGTTTAAATGTATCA
CAACACTCTTCATTTAATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFRYKVLVDGMNITKDSFNQIEK
LPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAVKAK
EIYLNHVGYKINIALCDNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQSSEI
INTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITELPRIKLEKVVTDAISYFEKEE
MWDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHLRKGALK

Sequences:

>Translated_366_residues
MTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFRYKVLVDGMNITKDSFNQIEK
LPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAVKAK
EIYLNHVGYKINIALCDNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQSSEI
INTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITELPRIKLEKVVTDAISYFEKEE
MWDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHLRKGALK
>Mature_365_residues
TVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFRYKVLVDGMNITKDSFNQIEKL
PHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAVKAKE
IYLNHVGYKINIALCDNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQSSEII
NTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITELPRIKLEKVVTDAISYFEKEEM
WDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHLRKGALK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 43581; Mature: 43450

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YKVLVDGMNITKDSFNQIEKLPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAE
HHEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAVKAKEIYLNHVGYKINIALCDNVY
HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCC
GLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQSSEI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
INTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
PRIKLEKVVTDAISYFEKEEMWDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEECCCCHHHH
RKGALK
HHCCCC
>Mature Secondary Structure 
TVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YKVLVDGMNITKDSFNQIEKLPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAE
HHEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAVKAKEIYLNHVGYKINIALCDNVY
HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCC
GLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQSSEI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
INTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
PRIKLEKVVTDAISYFEKEEMWDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEECCCCHHHH
RKGALK
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]