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The map label for this gene is ydhM [C]

Identifier: 218903616

GI number: 218903616

Start: 2372450

End: 2373085

Strand: Direct

Name: ydhM [C]

Synonym: BCAH820_2500

Alternate gene names: 218903616

Gene position: 2372450-2373085 (Clockwise)

Preceding gene: 218903615

Following gene: 218903617

Centisome position: 44.74

GC content: 31.76

Gene sequence:

>636_bases
ATGCGAATAATTAAGGAGTATGAGGAACGTAGAAAAGAAATTTTAGAAACGGCTGAACGATTATTTCTTACGAAAGGTTA
TACGAAAACAACAGTAAATGACATTTTAAAAGAGATAGGGATAGCAAAGGGGACGTTTTATCATTATTTTAAATCGAAAG
AAGAAGTAATGGATGAGATTATTATGAGGATTATTAAAGAAGATGTTGCTAAAGCGAAAGTAATCGTCTCTAATCCAAAT
ATACCAGTATTAGAAAAGTTATTTCGAGTTTTAATGGAGCAATCTCCAAAATCAGGTGATATAAAAGATAAAATGATTGA
TGCATTTCATCAACCAAATAATGCAGAAATGCATCAAAAAAGTTTAGTGCAATCTATTATTCATTTATCTCCTGTATTAA
CAGAAATTTTAGAACAAGGAATTGAAGAAGGGATATTTTCGACTTCATATCCACAAGAAACGATTGAACTATTACTATCT
TCAGCGCAAGTCATATTTGATGAGGGGTTATTCCAATGGAAGCCGGAAGAAATGATGAGGAGAGTGAAAGCTTATATTAA
AATGATGGAAGTATCTGTTGGAGCGAAAGAAGGATCTTTTAATTATATGCTGGAGGTTTTAATGAAACAGAGGTGA

Upstream 100 bases:

>100_bases
GAAGTAGGACGTTGTATATGTATAAAATAGGAAACTTTTTACTAATTAAACATATAATTAAAATAGACCGACAGTCGGTC
TGGTTGGAAGGAGAACGTGA

Downstream 100 bases:

>100_bases
TATTTTTTCTGTTTGTGTATTATAGACCGACAGTCGGTCTAAATTAAAGGAAGGGTGTGATTATGATATCTATTAGTATA
AAACCTTCGATGCAAGATTT

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; AcrR Family Transcriptional Regulator; Transcriptional Activator; Transcriptional Regulator Tetr Family; TetR-Type Transcriptional Regulator; Regulatory Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MRIIKEYEERRKEILETAERLFLTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEIIMRIIKEDVAKAKVIVSNPN
IPVLEKLFRVLMEQSPKSGDIKDKMIDAFHQPNNAEMHQKSLVQSIIHLSPVLTEILEQGIEEGIFSTSYPQETIELLLS
SAQVIFDEGLFQWKPEEMMRRVKAYIKMMEVSVGAKEGSFNYMLEVLMKQR

Sequences:

>Translated_211_residues
MRIIKEYEERRKEILETAERLFLTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEIIMRIIKEDVAKAKVIVSNPN
IPVLEKLFRVLMEQSPKSGDIKDKMIDAFHQPNNAEMHQKSLVQSIIHLSPVLTEILEQGIEEGIFSTSYPQETIELLLS
SAQVIFDEGLFQWKPEEMMRRVKAYIKMMEVSVGAKEGSFNYMLEVLMKQR
>Mature_211_residues
MRIIKEYEERRKEILETAERLFLTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEIIMRIIKEDVAKAKVIVSNPN
IPVLEKLFRVLMEQSPKSGDIKDKMIDAFHQPNNAEMHQKSLVQSIIHLSPVLTEILEQGIEEGIFSTSYPQETIELLLS
SAQVIFDEGLFQWKPEEMMRRVKAYIKMMEVSVGAKEGSFNYMLEVLMKQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24568; Mature: 24568

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIKEYEERRKEILETAERLFLTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHH
IMRIIKEDVAKAKVIVSNPNIPVLEKLFRVLMEQSPKSGDIKDKMIDAFHQPNNAEMHQK
HHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHH
SLVQSIIHLSPVLTEILEQGIEEGIFSTSYPQETIELLLSSAQVIFDEGLFQWKPEEMMR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RVKAYIKMMEVSVGAKEGSFNYMLEVLMKQR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRIIKEYEERRKEILETAERLFLTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHH
IMRIIKEDVAKAKVIVSNPNIPVLEKLFRVLMEQSPKSGDIKDKMIDAFHQPNNAEMHQK
HHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHH
SLVQSIIHLSPVLTEILEQGIEEGIFSTSYPQETIELLLSSAQVIFDEGLFQWKPEEMMR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RVKAYIKMMEVSVGAKEGSFNYMLEVLMKQR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA