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The map label for this gene is hemY2 [H]

Identifier: 218903552

GI number: 218903552

Start: 2315779

End: 2317179

Strand: Direct

Name: hemY2 [H]

Synonym: BCAH820_2436

Alternate gene names: 218903552

Gene position: 2315779-2317179 (Clockwise)

Preceding gene: 218903551

Following gene: 218903554

Centisome position: 43.67

GC content: 32.98

Gene sequence:

>1401_bases
ATGAAAACGGTTGTTGTTATCGGTGGAGGTATAACGGGACTTTCTACTATGTTTTATTTAGAGAAATTCAAAAAGGATAA
TAATATCGATTTAAATTTAATCCTTGTAGAAAAAGAAGAGTACTTAGGTGGTAAAATCCATAGTGTAGAAGAAAAGGATT
TTATTATGGAATCAGGAGCGGATTCTATTGTTGCACGTAATGAACATGTTATGCCACTTGTAAAAGATTTAAATTTAGAA
GAAGAAATGGTATATAACGAGACGGGTATTTCTTACATATATTCTGATAATACTTTACATCCAATTCCTTCTGACACTAT
ATTTGGGATACCGATGAGTGTCGAGTCGTTGTTTAGCAGTACGCTAGTATCAACGAAGGGGAAAATTGTTGCTTTAAAAG
ATTTTATAACGAAAAATAAAGAGTTTACAAAAGATACATCCCTTTCCCTATTTTTAGAAAGCTTCTTAGGGAAAGAATTA
GTGGAAAGACAAATTGCTCCGGTGCTTTCAGGTGTATATTCTGGTAAATTGAACGAGCTTACAATGGCATCTACATTACC
ATATTTACTGGAGTATAAAAATAAGTATGGAAGTATTATTAAAGGTTTTGAAGAGAATAAAAAACAGTTTCAATCAGCAG
GAAACAAAAAGTTCGTATCATTTAAAGGTGGACTATCTACGATTATTAATCGTTTAGAAGAAGTGCTGACTGAGACAGTT
GTTAAGAAAGGTGCTGTAACGACAGCTGTAAGTAAACAAGGTGATCGCTATGAGATCTCTTTTGCAAATCATGATTCCAT
CCAAGCTGATTATGTTGTTTTAGCAGCTCCGCATGATATCGCAGAAACTTTATTACAGTCTAATGAGTTAAACGAACAGT
TTCATACATTTAAAAACTCATCTCTTATAAGTATTTACTTAGGATTTGATATACTAGATGAACAATTACCGGCGGATGGC
ACAGGATTTATCGTAACGGAAAACAGTGATTTACATTGTGATGCTTGTACATGGACAAGCCGGAAGTGGAAACATACATC
TGGAAAACAAAAACTATTAGTGAGAATGTTTTATAAGAGTACTAATCCAGTATATGAAACGATTAAAAATTATAGTGAAG
AAGAATTAGTACGGGTTGCTTTATATGATATTGAAAAGAGTCTCGGAATTAAAGGTGAACCAGAAGTAGTTGAAGTGACA
AATTGGAAAGATTTAATGCCGAAATATCATTTAGAACATAATCAAGCGCTTCAAACATTACAAGAAAAAATGATGAATCT
TTACCCTAATATATACTTAGCTGGCGCTTCCTATCATGGTGTTGGTATTGGTGCGTGTATTGGAAATGGAAAGAACATTG
CAAATGAAATCATTGCAACATTAAATGAACCATCAAATTAA

Upstream 100 bases:

>100_bases
TAATTTCTTACAGAATGCGCAAGTTGCTAGTCGAATATAAGGACTTTTGGGTATAATAAGAAAGGAATTATTAATTGTAT
CGGTTAGGAGCGCAGCACAT

Downstream 100 bases:

>100_bases
TATAGAATAAATAAATAAATAAATAAAATGTCCCTCCATTATAACGGAGGGACATTTTATTTATTTTACTTGAATTGAGA
CTTTTTTGTTAGTTGTATTA

Product: protoporphyrinogen oxidase

Products: NA

Alternate protein names: PPO [H]

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MKTVVVIGGGITGLSTMFYLEKFKKDNNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE
EEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLSLFLESFLGKEL
VERQIAPVLSGVYSGKLNELTMASTLPYLLEYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIINRLEEVLTETV
VKKGAVTTAVSKQGDRYEISFANHDSIQADYVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDILDEQLPADG
TGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVT
NWKDLMPKYHLEHNQALQTLQEKMMNLYPNIYLAGASYHGVGIGACIGNGKNIANEIIATLNEPSN

Sequences:

>Translated_466_residues
MKTVVVIGGGITGLSTMFYLEKFKKDNNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE
EEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLSLFLESFLGKEL
VERQIAPVLSGVYSGKLNELTMASTLPYLLEYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIINRLEEVLTETV
VKKGAVTTAVSKQGDRYEISFANHDSIQADYVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDILDEQLPADG
TGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVT
NWKDLMPKYHLEHNQALQTLQEKMMNLYPNIYLAGASYHGVGIGACIGNGKNIANEIIATLNEPSN
>Mature_466_residues
MKTVVVIGGGITGLSTMFYLEKFKKDNNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE
EEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLSLFLESFLGKEL
VERQIAPVLSGVYSGKLNELTMASTLPYLLEYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIINRLEEVLTETV
VKKGAVTTAVSKQGDRYEISFANHDSIQADYVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDILDEQLPADG
TGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVT
NWKDLMPKYHLEHNQALQTLQEKMMNLYPNIYLAGASYHGVGIGACIGNGKNIANEIIATLNEPSN

Specific function: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. Also oxidizes the pathway intermediate coproporphyrinogen-III [H]

COG id: COG1232

COG function: function code H; Protoporphyrinogen oxidase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protoporphyrinogen oxidase family [H]

Homologues:

Organism=Homo sapiens, GI170650615, Length=493, Percent_Identity=25.1521298174442, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI4506001, Length=493, Percent_Identity=25.1521298174442, Blast_Score=115, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24649745, Length=491, Percent_Identity=24.0325865580448, Blast_Score=86, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR016040
- InterPro:   IPR004572 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: =1.3.3.4 [H]

Molecular weight: Translated: 52161; Mature: 52161

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVVVIGGGITGLSTMFYLEKFKKDNNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGA
CCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHCCCCEECCCHHHHHHHCCC
DSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSS
CCEEECCCCCCHHHHHCCCCHHHEECCCCCEEEEECCEECCCCCCCEEECCCCHHHHHHH
TLVSTKGKIVALKDFITKNKEFTKDTSLSLFLESFLGKELVERQIAPVLSGVYSGKLNEL
HHHHCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TMASTLPYLLEYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIINRLEEVLTETV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
VKKGAVTTAVSKQGDRYEISFANHDSIQADYVVLAAPHDIAETLLQSNELNEQFHTFKNS
HHCCCCEEHHHCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHCCC
SLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKS
CEEEEEECCHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHC
TNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQALQTL
CCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHCCCHHCCHHHHHHHH
QEKMMNLYPNIYLAGASYHGVGIGACIGNGKNIANEIIATLNEPSN
HHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKTVVVIGGGITGLSTMFYLEKFKKDNNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGA
CCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHCCCCEECCCHHHHHHHCCC
DSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSS
CCEEECCCCCCHHHHHCCCCHHHEECCCCCEEEEECCEECCCCCCCEEECCCCHHHHHHH
TLVSTKGKIVALKDFITKNKEFTKDTSLSLFLESFLGKELVERQIAPVLSGVYSGKLNEL
HHHHCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TMASTLPYLLEYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIINRLEEVLTETV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
VKKGAVTTAVSKQGDRYEISFANHDSIQADYVVLAAPHDIAETLLQSNELNEQFHTFKNS
HHCCCCEEHHHCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHCCC
SLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKS
CEEEEEECCHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHC
TNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQALQTL
CCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHCCCHHCCHHHHHHHH
QEKMMNLYPNIYLAGASYHGVGIGACIGNGKNIANEIIATLNEPSN
HHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1459957; 9579061; 9384377; 8288631 [H]