Click here to switch to the map view.

The map label for this gene is yodJ [H]

Identifier: 218903217

GI number: 218903217

Start: 1995684

End: 1996424

Strand: Direct

Name: yodJ [H]

Synonym: BCAH820_2101

Alternate gene names: 218903217

Gene position: 1995684-1996424 (Clockwise)

Preceding gene: 218903216

Following gene: 218903218

Centisome position: 37.64

GC content: 39.41

Gene sequence:

>741_bases
ATGAAAAAAAGATGGATACTACTTGGTATCGTAGCGATGATACTCATTGTTGGAGTAGCAGGAATCAATTATAAAATGTA
TAAGGATAAGCAGGCGCGCGAGGTAAATGTAAATAACATATTTCCGAAAGCGAAAGAAACGATTGCGAATATGGATGGGG
ATATTGCGGTAATTAGTAATCCGAATTCGATGCTTGTGCTTGTGAATAAAAGTAGGCGTTTACCAGATGGGTATAAACCG
CCAGATTTAGTTATTCCGAAAGTGCGCTACTCAAGTGAAGGTGATCAAGAAAAGAAAAAAATGAGGAAAGAGGCAGCCGG
TGCGCTTGAGGAAATGTTTCAGCAAGCGGATAAGGAGCGTATTTTTCTTTTTGCAGTTTCTGGATTTAGATCTTTTGATC
GACAAAAAGCGTTAAATACGATGTATAAAAAGCAAGATGGAGAAGCAAAAACAGCGATGTCGAGTGCAGTTCCTGGAACG
AGTGAACATCAAACGGGGCTTGCTATGGATATTACATCGCAATCTGCTAAGTTTCAGTTAGAGACAATTTTTGGTGAAAC
GAAAGAAGGGCAGTGGCTTTCTGAAAATGCCCATAAATTTGGTTTTGTCATTCGATATACGAAAGAGAAGGAGTCACTTA
CTGGTTATCGATATGAACCATGGCATGTGAGGTATGTGGGGAATCCACAAGCTACATATTTATATGAAAATCAACTGACG
CTTGAAGAAGTAGCAGAGTGA

Upstream 100 bases:

>100_bases
GATTTGAGAAAGAAGGTGTCAAAAGAGCTTCTCTTATTATCGATGGAAAGAACATTGATGAGTATGAAATGGCCAAATTA
TTAAAATAAGAGGTCGTTAT

Downstream 100 bases:

>100_bases
AAAATTGAGGGGAGAGAAGGGTTATGACGGTGTTATATAATAAAAAAGTACACGCATATGTGACAAGAGAAAAAGAAGGA
GTTATGCAACTGCTTGTTTT

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSMLVLVNKSRRLPDGYKP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERIFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSAKFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
LEEVAE

Sequences:

>Translated_246_residues
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSMLVLVNKSRRLPDGYKP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERIFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSAKFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
LEEVAE
>Mature_246_residues
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSMLVLVNKSRRLPDGYKP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERIFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSAKFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
LEEVAE

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 28021; Mature: 28021

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISN
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHCCCHHHHHHHCCCCCEEEEEC
PNSMLVLVNKSRRLPDGYKPPDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKER
CCCEEEEEECCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
IFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGTSEHQTGLAMDITSQSAKFQL
EEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEE
ETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCC
LEEVAE
HHHHCC
>Mature Secondary Structure
MKKRWILLGIVAMILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISN
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHCCCHHHHHHHCCCCCEEEEEC
PNSMLVLVNKSRRLPDGYKPPDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKER
CCCEEEEEECCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
IFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGTSEHQTGLAMDITSQSAKFQL
EEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEE
ETIFGETKEGQWLSENAHKFGFVIRYTKEKESLTGYRYEPWHVRYVGNPQATYLYENQLT
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCC
LEEVAE
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]