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The map label for this gene is yvbU [H]

Identifier: 218903069

GI number: 218903069

Start: 1860104

End: 1860895

Strand: Direct

Name: yvbU [H]

Synonym: BCAH820_1952

Alternate gene names: 218903069

Gene position: 1860104-1860895 (Clockwise)

Preceding gene: 218903067

Following gene: 218903070

Centisome position: 35.08

GC content: 37.25

Gene sequence:

>792_bases
ATGACGCAGCCAGCTGTAAGTCATGCGATTTCAAGTATTGAGTCAGAGTTAGGAGTTACGATTCTTATACGTGATAAACG
AAAAGGGTTAATTGTTACGGATGTAGGAAGCAGAATTCTTGTACATATTAGAGAAATTTTGAACGGTGTAGAGAAGATTG
AACAAGAAGTTGCGATGGAGAAAGGACACGAAGTTGGGACGATTCGAATTGGGAGTTTTCCGAGTGCTTCTGCACATTTC
TTACCGAAAATGATAAACCATTTTAAGGAGAAGTATCCGAACTTAGAAGTCGTTCTTTGTGAAGGAACGATTAAAGAAGT
TGAAGATTGGTTAGTATCGAGGGTTGTTGATATAGGGATTGTTATTTTACCTAATAAAGAGATGGAGATTGTTCCATTAA
CGAAGGGGAAAATGGTTGTTATTTTAAGAGAGGATCATCCTCTTTGCAAGAAGGACGCTATTACAATTCGTGATTTGGAG
AATGAACCGATCATATTATGTAAGGGCGGATACGAACCACCTATTATCGATATGTTTAAACAAGCAAATGTACCACTTCG
AGCTGAGTATGTAATTTCGACAGTTACGACAGCTTTAAATATGATTCAAGAAGGGTTAGGCATTGCAATATTAGCTGAAT
TATCTTTAACGAATTTACCAAAAAATGTGCAAACGAGAGAATTGGAACCGCAAGTATGGAGAGAAATTGCTTTAGCTGTT
CCTTCATTAAGGGATTCTTCAATCGCTGTGCAGCTATTTATTGAAGAATTTCAGGCGCTATTTGCAGAATAA

Upstream 100 bases:

>100_bases
TGAGGAGTATAAGTGATTAGTTATGACCATTACACAACTACAAGTATTAATAAAAACTATTGAGTTAGGTAGTTTTACGA
AGGCAGCTCGGGTGTTAAAT

Downstream 100 bases:

>100_bases
AAAGAGGTGTCTCGTATATTATAATGGGACACTTTTTAATTTACTTATAAAAAATATGTGAAAAGGATTGACTTATTTTT
TAGTTGTAACTATAATGATT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHF
LPKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKDAITIRDLE
NEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPKNVQTRELEPQVWREIALAV
PSLRDSSIAVQLFIEEFQALFAE

Sequences:

>Translated_263_residues
MTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHF
LPKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKDAITIRDLE
NEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPKNVQTRELEPQVWREIALAV
PSLRDSSIAVQLFIEEFQALFAE
>Mature_262_residues
TQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFL
PKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKDAITIRDLEN
EPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPKNVQTRELEPQVWREIALAVP
SLRDSSIAVQLFIEEFQALFAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=224, Percent_Identity=26.3392857142857, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790399, Length=221, Percent_Identity=28.5067873303167, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=220, Percent_Identity=23.1818181818182, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788296, Length=218, Percent_Identity=26.1467889908257, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=180, Percent_Identity=26.1111111111111, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=27.0161290322581, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=257, Percent_Identity=23.7354085603113, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1789204, Length=263, Percent_Identity=23.9543726235741, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=221, Percent_Identity=23.0769230769231, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=247, Percent_Identity=25.1012145748988, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=151, Percent_Identity=25.8278145695364, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29359; Mature: 29228

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQEVAME
CCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
KGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGI
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCE
VILPNKEMEIVPLTKGKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFK
EEECCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHH
QANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPKNVQTRELEPQVWREIALAV
HCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHC
PSLRDSSIAVQLFIEEFQALFAE
CCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQEVAME
CCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
KGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGI
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCE
VILPNKEMEIVPLTKGKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFK
EEECCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHH
QANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPKNVQTRELEPQVWREIALAV
HCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHC
PSLRDSSIAVQLFIEEFQALFAE
CCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]