Click here to switch to the map view.

The map label for this gene is ydfL [H]

Identifier: 218902825

GI number: 218902825

Start: 1622287

End: 1623117

Strand: Direct

Name: ydfL [H]

Synonym: BCAH820_1708

Alternate gene names: 218902825

Gene position: 1622287-1623117 (Clockwise)

Preceding gene: 218902824

Following gene: 218902826

Centisome position: 30.59

GC content: 32.49

Gene sequence:

>831_bases
ATGTTATTAAATAAACGTTTTACAATTGGAGAAATGGCAAAAATGCATAATATAGCGGAATCTACTTTACGTTATTATGA
TGAAAAAGGAATTTTTCATCCGTCCATTGTGGACCCACAAACAAATTATCGCTATTACACAATCGATCAATTTTCACTAT
TAGATACGATTAAGTTTTTACGCCAATTAAATATTCCATTAAAGGAAATTAAGAAATATATTGATGAAAGAAATCCGGCA
TACGCACTGAATTTACTGGAAAAACAACAAGAAATGATGTTGAAAAAACAAAGAGAAATTGAGTATGCTTTGGCGAAAAT
GGAGCATAGAATTCATTTGATTAAGGAAGCAACAAAAGCAAAAGCTGAACAAATGGTAATGAAAGAGATCCCGCGAAGAA
AAATTACAGCAATTGCGGTTGCTCCAAATACAACGGACGATATGTTTGAGTACTACATTCATTCGTTGCAAAAAAATATG
AGGCAAATGGATGATAGCTTATTTTCTGGAGATATCGGTGTAACTGTTGCGAAAAAAGGATTCATGCAAAATGAGTTTCA
AGCATATAGCAGTGTGTTTATTCTTTTGGATTACATGCCTTTTCAAGTACATCGTTCAGATGAAATTAAAGAAGGTATGT
TTGCCTGTGTATATCATCATGGGCCATATGAAGAAACTGATGAAACATATAAGAAGTTAATGAAATACATTGATCAAGAA
GGATATGAAATAGACGGAGATGCGATTGAGATTGCATTAATTGATTGGTCTGTAACAGAAAATCCAGATGAGCAAGTAAC
CGAAATTCAAATTCCTGTAGTGAAAAAATAA

Upstream 100 bases:

>100_bases
GTAATAGTGAATAAAAAGAATTCTCGTATGGGAATTCTTTTTTGTTTTGAAGATAAAATGAACATATAATGAAGTAAATA
GGAATGGAAGGGAATAAAAG

Downstream 100 bases:

>100_bases
GGTGAAAACCTTTGAACTGATGACAAATTTACATTCATTAATATAATTCAGTTACCTATTTTTTAATACTCTCTTGACCT
TCAAGTTACTTGAAGGTTTA

Product: transcriptional regulator, MerR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFLRQLNIPLKEIKKYIDERNPA
YALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKAKAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNM
RQMDDSLFSGDIGVTVAKKGFMQNEFQAYSSVFILLDYMPFQVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
GYEIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK

Sequences:

>Translated_276_residues
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFLRQLNIPLKEIKKYIDERNPA
YALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKAKAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNM
RQMDDSLFSGDIGVTVAKKGFMQNEFQAYSSVFILLDYMPFQVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
GYEIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK
>Mature_276_residues
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFLRQLNIPLKEIKKYIDERNPA
YALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKAKAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNM
RQMDDSLFSGDIGVTVAKKGFMQNEFQAYSSVFILLDYMPFQVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
GYEIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32554; Mature: 32554

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
RQLNIPLKEIKKYIDERNPAYALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKA
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNMRQMDDSLFSGDIGVTVAKKG
HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHC
FMQNEFQAYSSVFILLDYMPFQVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
CHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCC
GYEIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK
CCEECCCEEEEEEEEEECCCCCCCHHEEEECCCCCC
>Mature Secondary Structure
MLLNKRFTIGEMAKMHNIAESTLRYYDEKGIFHPSIVDPQTNYRYYTIDQFSLLDTIKFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
RQLNIPLKEIKKYIDERNPAYALNLLEKQQEMMLKKQREIEYALAKMEHRIHLIKEATKA
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAEQMVMKEIPRRKITAIAVAPNTTDDMFEYYIHSLQKNMRQMDDSLFSGDIGVTVAKKG
HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHC
FMQNEFQAYSSVFILLDYMPFQVHRSDEIKEGMFACVYHHGPYEETDETYKKLMKYIDQE
CHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCC
GYEIDGDAIEIALIDWSVTENPDEQVTEIQIPVVKK
CCEECCCEEEEEEEEEECCCCCCCHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]