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The map label for this gene is 218902427

Identifier: 218902427

GI number: 218902427

Start: 1248392

End: 1248910

Strand: Reverse

Name: 218902427

Synonym: BCAH820_1309

Alternate gene names: NA

Gene position: 1248910-1248392 (Counterclockwise)

Preceding gene: 218902428

Following gene: 218902426

Centisome position: 23.55

GC content: 36.22

Gene sequence:

>519_bases
ATGAAATTAGGCATTGTAATTTTTCCATCTAAAATGATTCAAGATAAAGCGAACGGATTGCGTAAACGTTATGATCCACA
CTACGCATTAGTTCCGCCACATATTACATTGAAAACACCCTTTGAGACGCAAGATGAACAATTAGAATCGATTGTAAATG
AGTTACATACAATCGCAAGTAAAACGAACCCTTTCACCCTTCATGTTGGAAAAGTTGGTTCATTCGCACCTGTTAATAAT
GTTATTTATTTTAAAGTAGAAAAAACACCTGAACTTACTTTCTTAAATGAGGAAATGCATAACGGATTCTTTACACAAGA
ACGCGAATACGCTTTTGTACCTCATTTAACAATTGGGCAAGGCTTATCAGATGCAGAGCATGCTGATGTACTAGGTCGAT
TACGTATGAAAGATTTCTATTACGAACAACCAATTGACCGTTTCCACCTACTATATCAATTAGAAAATGGAACATGGACT
GTACACGAAACATTCCGCCTTGGAAAGGGGAACAACTAA

Upstream 100 bases:

>100_bases
TGAAATAATAGAGAGCAGTATTCAGAATAATTTGATATAATAGATTAAGAGAGTTATTTTCTCAAAATCTAACTAGACTT
ACAAAGGGAGGAATTGGAAC

Downstream 100 bases:

>100_bases
TTTGCATGCACAGATCGTACAAACGGACGAACAACTAAGAGATGCATTCTCTGTACGTAAGCAAGTATTTGTGAAGGAAC
AGCAAGTTTCTGCTGAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHNGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN

Sequences:

>Translated_172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHNGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN
>Mature_172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHNGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 19905; Mature: 19905

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIAS
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHC
KTNPFTLHVGKVGSFAPVNNVIYFKVEKTPELTFLNEEMHNGFFTQEREYAFVPHLTIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEECHHHCCCCCCCCCCEEECCCEECCC
GLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWTVHETFRLGKGNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCC
>Mature Secondary Structure
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIAS
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHC
KTNPFTLHVGKVGSFAPVNNVIYFKVEKTPELTFLNEEMHNGFFTQEREYAFVPHLTIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEECHHHCCCCCCCCCCEEECCCEECCC
GLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWTVHETFRLGKGNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA