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The map label for this gene is yobO [H]

Identifier: 218902403

GI number: 218902403

Start: 1227598

End: 1228986

Strand: Reverse

Name: yobO [H]

Synonym: BCAH820_1285

Alternate gene names: 218902403

Gene position: 1228986-1227598 (Counterclockwise)

Preceding gene: 218902404

Following gene: 218902398

Centisome position: 23.18

GC content: 39.81

Gene sequence:

>1389_bases
ATGAAGAAAAAATCTTCTAAACAAAAAAGAAAATGCCCGCCTTTTTATCTGCCTATGTACGGAATTAACAACTGGTGTAG
CATTCGAGCTGCAGCTTTAGAAGAACTGGAAGGACAAGAGGCATCCCTAAAAAACAAAGCTCGACCAAAATATGTCTCTT
TAGAAAATGCTGTAATGAGCCGCATCATTGATAATCGAAAAACAAAGAGGCAGCAAAAAAATAAACCTCTCTCTACTCAT
ACTGAACAGATTGTGCCTTCTGAGCAAGCAGAGAAGAAGACAGAAGAAAATATCCCTGTAGCAATAAATAAAAAAGCGGA
ATCAGAAATTCCAGCTGCTATTATAAATCAAGTAAAAAAAATAAAAGAAGCATTAGCACCATCAGGTGATAAACAAACAG
AAAAGACTATCATAATTCAAACCCCTACACCTGAAAATACAAAAGTAAAAAAAGGAGGGCGTTATGCACATGCAGAGGGG
CTTCACTCTAATGCAGAGGGTACAGCTTCACATGCAGAAGGGCTTCTTACACATGCAAAAGGTTCTTTCTCTCATGCCGA
AGGATCAAAAACGAAAGCAACTGGACATAGTTCCCATAGTGAAGGAAGTGAAACGACAGCAGGTGGCTCTTATTCTCATG
CGGAAGGTAAACATACAATCGCTTTAGGCGAAGCAGCACATGCAGAAGGAACCGCGACTATCGCTAACGGATTCTCTTCT
CATGCGGAAGGTAATCATACATCAACAGCTCACTTTGCAGGTAGCCATATTATGGGGCGCTTCGGTACAGCAGAAGAATC
TTATTCTTGGTTTATTGCAAACGGCACAAATGAAACCGAGCATAATATCGGTGCAAAGTGGCTTGCTCATAATGGAGAAA
TGTACATTGATGGCGCTTCTTATAATGCAAGCGGAACTGATTTTGCACAAATGTTTGAAGCAGTAGACAATACTCTTATT
GATGTAGGTTATTTCGTTACATTTAGTAGCGAAGAAAAGATTCGAATCGCTACTTCAAACGATTCATTCATCTTAGGAAT
ATCTAGTGCTACCCCGGCCCTTATAGGAAATAGCGGTGCTCTAAGTTGGCAAAAACGCTACAAAACAGATAGCTTCGGAA
AACGTCAATATGTACGTACGGAATCGCAAGACATACAACCACTTTTAAATACAGAATGGGATCCAGCTTGCAAATATATA
GCAAGGAAAGATCGTACCGAGTGGCTTCCTGTCGGATTAATTGGACAAATGTTAGTACGTGATGACGGCACTTGCGAAAC
ACATGGATATTGTCGTCCAAATGACAATGGTATTGCTACAAAATCCGAAAGTGGCTTTTTCGTTATAAAGCGCACGGGTG
AAAATCAAATTTTAATATTATTCCGCTAA

Upstream 100 bases:

>100_bases
GCGCCTCTCATATAAAAACTGGGTAAAGTCATTAAAAAAGATGCAATAAAGTGCGTCTTTTTTTAATGACACGGCATATA
CTGTCGCAGGAGGTGACAGA

Downstream 100 bases:

>100_bases
GAAAAAAGGGAACAAAATTCTTCATTACATAAGAATTTTGTTCCCTTTTTAAGTCTGTCTTAATACCTCTTGCATATCAC
TTGGAATCATTGCAGTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MKKKSSKQKRKCPPFYLPMYGINNWCSIRAAALEELEGQEASLKNKARPKYVSLENAVMSRIIDNRKTKRQQKNKPLSTH
TEQIVPSEQAEKKTEENIPVAINKKAESEIPAAIINQVKKIKEALAPSGDKQTEKTIIIQTPTPENTKVKKGGRYAHAEG
LHSNAEGTASHAEGLLTHAKGSFSHAEGSKTKATGHSSHSEGSETTAGGSYSHAEGKHTIALGEAAHAEGTATIANGFSS
HAEGNHTSTAHFAGSHIMGRFGTAEESYSWFIANGTNETEHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDNTLI
DVGYFVTFSSEEKIRIATSNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYI
ARKDRTEWLPVGLIGQMLVRDDGTCETHGYCRPNDNGIATKSESGFFVIKRTGENQILILFR

Sequences:

>Translated_462_residues
MKKKSSKQKRKCPPFYLPMYGINNWCSIRAAALEELEGQEASLKNKARPKYVSLENAVMSRIIDNRKTKRQQKNKPLSTH
TEQIVPSEQAEKKTEENIPVAINKKAESEIPAAIINQVKKIKEALAPSGDKQTEKTIIIQTPTPENTKVKKGGRYAHAEG
LHSNAEGTASHAEGLLTHAKGSFSHAEGSKTKATGHSSHSEGSETTAGGSYSHAEGKHTIALGEAAHAEGTATIANGFSS
HAEGNHTSTAHFAGSHIMGRFGTAEESYSWFIANGTNETEHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDNTLI
DVGYFVTFSSEEKIRIATSNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYI
ARKDRTEWLPVGLIGQMLVRDDGTCETHGYCRPNDNGIATKSESGFFVIKRTGENQILILFR
>Mature_462_residues
MKKKSSKQKRKCPPFYLPMYGINNWCSIRAAALEELEGQEASLKNKARPKYVSLENAVMSRIIDNRKTKRQQKNKPLSTH
TEQIVPSEQAEKKTEENIPVAINKKAESEIPAAIINQVKKIKEALAPSGDKQTEKTIIIQTPTPENTKVKKGGRYAHAEG
LHSNAEGTASHAEGLLTHAKGSFSHAEGSKTKATGHSSHSEGSETTAGGSYSHAEGKHTIALGEAAHAEGTATIANGFSS
HAEGNHTSTAHFAGSHIMGRFGTAEESYSWFIANGTNETEHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDNTLI
DVGYFVTFSSEEKIRIATSNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYI
ARKDRTEWLPVGLIGQMLVRDDGTCETHGYCRPNDNGIATKSESGFFVIKRTGENQILILFR

Specific function: Unknown

COG id: COG5295

COG function: function code UW; Autotransporter adhesin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021865
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF11962 DUF3476 [H]

EC number: NA

Molecular weight: Translated: 50554; Mature: 50554

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKSSKQKRKCPPFYLPMYGINNWCSIRAAALEELEGQEASLKNKARPKYVSLENAVMS
CCCCCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCEEEHHHHHHH
RIIDNRKTKRQQKNKPLSTHTEQIVPSEQAEKKTEENIPVAINKKAESEIPAAIINQVKK
HHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH
IKEALAPSGDKQTEKTIIIQTPTPENTKVKKGGRYAHAEGLHSNAEGTASHAEGLLTHAK
HHHHHCCCCCCCCCCEEEEECCCCCCCEECCCCCEECCCCCCCCCCCCHHHHHHHHHHCC
GSFSHAEGSKTKATGHSSHSEGSETTAGGSYSHAEGKHTIALGEAAHAEGTATIANGFSS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCHH
HAEGNHTSTAHFAGSHIMGRFGTAEESYSWFIANGTNETEHNIGAKWLAHNGEMYIDGAS
CCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCEEEECCC
YNASGTDFAQMFEAVDNTLIDVGYFVTFSSEEKIRIATSNDSFILGISSATPALIGNSGA
CCCCCCHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEECCCCC
LSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYIARKDRTEWLPVGLIGQMLVR
CCHHHHCCCCCCCCHHHCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHC
DDGTCETHGYCRPNDNGIATKSESGFFVIKRTGENQILILFR
CCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCEEEEEEC
>Mature Secondary Structure
MKKKSSKQKRKCPPFYLPMYGINNWCSIRAAALEELEGQEASLKNKARPKYVSLENAVMS
CCCCCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCEEEHHHHHHH
RIIDNRKTKRQQKNKPLSTHTEQIVPSEQAEKKTEENIPVAINKKAESEIPAAIINQVKK
HHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH
IKEALAPSGDKQTEKTIIIQTPTPENTKVKKGGRYAHAEGLHSNAEGTASHAEGLLTHAK
HHHHHCCCCCCCCCCEEEEECCCCCCCEECCCCCEECCCCCCCCCCCCHHHHHHHHHHCC
GSFSHAEGSKTKATGHSSHSEGSETTAGGSYSHAEGKHTIALGEAAHAEGTATIANGFSS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCHH
HAEGNHTSTAHFAGSHIMGRFGTAEESYSWFIANGTNETEHNIGAKWLAHNGEMYIDGAS
CCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCEEEECCC
YNASGTDFAQMFEAVDNTLIDVGYFVTFSSEEKIRIATSNDSFILGISSATPALIGNSGA
CCCCCCHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEECCCCC
LSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYIARKDRTEWLPVGLIGQMLVR
CCHHHHCCCCCCCCHHHCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHC
DDGTCETHGYCRPNDNGIATKSESGFFVIKRTGENQILILFR
CCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]