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The map label for this gene is ydeE [H]

Identifier: 218902312

GI number: 218902312

Start: 1144411

End: 1145313

Strand: Direct

Name: ydeE [H]

Synonym: BCAH820_1194

Alternate gene names: 218902312

Gene position: 1144411-1145313 (Clockwise)

Preceding gene: 218902309

Following gene: 218902313

Centisome position: 21.58

GC content: 38.43

Gene sequence:

>903_bases
ATGGAAAGCTATGAAACACAAATTCAAAGGTCCATTGATTATATCGAGGAAGATGTAATGGAAAAACAGACGCTGCGTAA
TTTAGCTCGCATTGCAGGTTTTTCTGAGTCGCATTTTCATCGTGTATTCCAGGCGTTAGTAGGTGATACGGTAATGGAGT
ATGTCCGAAAGAGGAGGTTAGCCCGGGCAGCTTATCAACTTTCTCATACGGATGAAAAAATTATTGATATCGCATTTGAG
CATGGCTTTCAATCTCACGAAACGTTCACGAGAGCCTTTAAAAAATTATTTCAAATGACACCGAGTGAATATCGAAAGCA
AGAAATAGAAACACCGATGTATTACAGTGTGAATGTAAAGCAAAGAAAATTAAATCCGTATTTAGGAGGTATACAAATGG
AATATCGTATTGTAAATAAACCAGAATTTTTAATGGCGGGTTATGAACTGAAGACGACAAGTAAAGAAGGGAAGAACCAT
CACGACATTCCAGCATTTTGGCAAGAATATTTACAAAAAGATCTTGGAACGACGATTCCGAATCGTAAAGATACGAGCCA
ATGGGTAGAGCTTGGATTATGTACTGATTTTAATTTAGAAACAGGGGACTTCACTTATATTATCGGAATGGAAGTTACAG
ACTTTGAAAATGTACCAAATGAAATTGCAAAGCGTACGTTCCCAGCAGCAACATATGCAGTATTTACAACGCCGAAAGTT
CCTCATGAAGAAATGGTATCGTCTATTCACCAAACATGGAATGCAGTATTCTCAGAGTGGTTCCCGCATTCAGGATACGA
ACATTGCGGCGTTAATGAGTTTGAGCTATACGATGAGCGTTCCCATGCAGATAAAAGTGAGTTCGCTCAAATTGAACTTT
GGATACCGGTGAAGAAGAAATAA

Upstream 100 bases:

>100_bases
TATAAAAAAGTTACAATTTTTTATGGAATTATAGTAAAAAACGTCAAGAATTGGATAAGATTCTCTTTTATCATAATACA
TATAAGGCGGGTGAACAGAG

Downstream 100 bases:

>100_bases
TAGATTGAGAGCGAGTCATTGAGAAATGGTTCGCTTTTTTATAAAGGGAGAGTGGGGATATGTTCCAAAAACTAGAATGT
GTATCTATACATACGAAGGA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
HDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK

Sequences:

>Translated_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
HDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
>Mature_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
HDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=39.3939393939394, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=35.9223300970874, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=31.6326530612245, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35316; Mature: 35316

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHHDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHCEEEEEEEECCCC
>Mature Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHHDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]