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The map label for this gene is ydfL [H]

Identifier: 218902264

GI number: 218902264

Start: 1091570

End: 1092373

Strand: Direct

Name: ydfL [H]

Synonym: BCAH820_1146

Alternate gene names: 218902264

Gene position: 1091570-1092373 (Clockwise)

Preceding gene: 218902262

Following gene: 218902265

Centisome position: 20.59

GC content: 29.1

Gene sequence:

>804_bases
TTGGAAAATTTATTTTCTATTGGTGAAGTTGCTAATATGAAAGGTGTTACAATAAAAGCTTTAAGATATTATCATCAAAC
AGGTATTCTTATCCCCGTATACATTGATACAAAAACGGGTTATAGATACTATTCGGTAGATCAATTTGTTTATATTGATA
TAATTAAAGTTTGTAGAGCTTTAGGAACGAGTACGAAAGAACTGCAACAAATTTTTACTGAAAAGAATATGGATGAATTA
TTAAAATTTTTAGCATTAAAAAGAGAAGAAACTGAGCAAAAAATAAAAGAGATGCAAGCAGTCATTCATACGATTGATAA
ACTAGATAATAGTGTACAAGTCGCCAAAAAGGTACTAGTACATAATCAAATAACAAGACAGTATTTTGAGCAACGTTATA
TCGTCACTGCTCCATGCAGAGAAGTGGGTAATTTTAAAGAATTCCTTTATTATTCGGATGTAGATAAAATTATTCAGGAG
AGAAATTTAGAAACAACGATGCAGATTGGTATAGCATATACCATTCATTCAAAATACAGATTTGAACCAAAGTATGCTTT
TTCTGTGTTATATAAATATGACTACACAGAAAACGAGCAAAATATAGATATATTACCAGAAGGTAACTATTTGACACTGG
CCTATAAAAAGAATAATAAAGAAGAAAGTATGGAGAAATTAAAAGATTATATAGAGAAAAATAATGTAACAATCAAAAAT
TGCATTGAAGTGGAATTGTTAGATGAGTTTTTTAGTACGGATTCTTACAGTTGCCAAATGCAATTGCTTATAGAGAAGGA
GTGA

Upstream 100 bases:

>100_bases
GAAATTCCCTCTCTTTTTATACTACGCTTTTATTAACTTTAACGATAAAATAATAATGTCTCCCTTAAGAGGAGAGTCAA
GAATAAGGGGGCAAAAAAGA

Downstream 100 bases:

>100_bases
AAACGCACTTTAGAGCATACTCAGAAATAATATAAACGAGAAGATGATGAGTACAATTGTTGAAAAAGCATCCTCAAAGT
ATGTGAGGATGCTTTTTTAG

Product: transcriptional regulator, MerR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRALGTSTKELQQIFTEKNMDEL
LKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLVHNQITRQYFEQRYIVTAPCREVGNFKEFLYYSDVDKIIQE
RNLETTMQIGIAYTIHSKYRFEPKYAFSVLYKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CIEVELLDEFFSTDSYSCQMQLLIEKE

Sequences:

>Translated_267_residues
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRALGTSTKELQQIFTEKNMDEL
LKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLVHNQITRQYFEQRYIVTAPCREVGNFKEFLYYSDVDKIIQE
RNLETTMQIGIAYTIHSKYRFEPKYAFSVLYKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CIEVELLDEFFSTDSYSCQMQLLIEKE
>Mature_267_residues
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRALGTSTKELQQIFTEKNMDEL
LKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLVHNQITRQYFEQRYIVTAPCREVGNFKEFLYYSDVDKIIQE
RNLETTMQIGIAYTIHSKYRFEPKYAFSVLYKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CIEVELLDEFFSTDSYSCQMQLLIEKE

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 31635; Mature: 31635

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRA
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHH
LGTSTKELQQIFTEKNMDELLKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLV
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HNQITRQYFEQRYIVTAPCREVGNFKEFLYYSDVDKIIQERNLETTMQIGIAYTIHSKYR
HHHHHHHHHHCCCEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEE
FEPKYAFSVLYKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CCCCCEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
CIEVELLDEFFSTDSYSCQMQLLIEKE
HHHHHHHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRA
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHH
LGTSTKELQQIFTEKNMDELLKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLV
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HNQITRQYFEQRYIVTAPCREVGNFKEFLYYSDVDKIIQERNLETTMQIGIAYTIHSKYR
HHHHHHHHHHCCCEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEE
FEPKYAFSVLYKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CCCCCEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
CIEVELLDEFFSTDSYSCQMQLLIEKE
HHHHHHHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]