Click here to switch to the map view.

The map label for this gene is algU [H]

Identifier: 218902228

GI number: 218902228

Start: 1062495

End: 1063028

Strand: Direct

Name: algU [H]

Synonym: BCAH820_1110

Alternate gene names: 218902228

Gene position: 1062495-1063028 (Clockwise)

Preceding gene: 218902227

Following gene: 218902229

Centisome position: 20.04

GC content: 33.9

Gene sequence:

>534_bases
GTGGATGAATTAACGGTAGAAGTGTTTGAAATAGAAGATAAGGAGGACCTTATTGACGAAATAATGAACAAGTATGGACA
AGAAGTCTTACAGCTTGTGTATTCATATGTGAATAATAAAGAGGTCGCGGAGGATGTAACGCAAGATATATTTGTGAAAT
GCTATAAATCTCTTCATACATATAAAGGGAATTCGAACTTAAAAACATGGTTATGGAGAATTGCGATTAATCATTGTAAG
GACTATTTAAAAAGTTGGTATAACAAAAAGGTCATCGTGACAGAGGATGACTTTACGTATATGGAGAGTCAAAAAGAAAG
TGTGGAACAAATAGTTATTCAAAATGCAGAGGATAGTAGGCTTGCTTCTGCAGTAATGAGTTTACCGATCAAATATCGAG
AAGTCATTTATCTATTTTATTATGAAGAGTTATCAATTAAAGAGATTGCTACGGTAATAGAAGTGAAGGGAAACACGATA
AAAACGAGGCTGAAAAAAGCAAAGGAGCTTTTGAAGAAAGGATTGGAGGAGTAA

Upstream 100 bases:

>100_bases
TGTTTTATAAAAAATGTTATTATCAATTACATTTTTTTATTTATTTTATAAAACTTTTCCATACAGTGCGTCGTCTAATA
TATGGAAAGGAGGAAATGAT

Downstream 100 bases:

>100_bases
TCAAATGGAAGATCGATTAAAAGGCTTGCGAAAATCAATGGAGAACACAACTTTTAAACATTTGAGTTTTTCTGATCAGC
ACCAGAAGCGGGTGCGTGAA

Product: RNA polymerase factor sigma C

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MDELTVEVFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKGNTI
KTRLKKAKELLKKGLEE

Sequences:

>Translated_177_residues
MDELTVEVFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKGNTI
KTRLKKAKELLKKGLEE
>Mature_177_residues
MDELTVEVFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKGNTI
KTRLKKAKELLKKGLEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=156, Percent_Identity=30.1282051282051, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20930; Mature: 20930

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELTVEVFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKGNTIKTRLKKAKELLKKGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDELTVEVFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKGNTIKTRLKKAKELLKKGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]