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The map label for this gene is yfkM [H]

Identifier: 218902056

GI number: 218902056

Start: 890900

End: 891415

Strand: Reverse

Name: yfkM [H]

Synonym: BCAH820_0938

Alternate gene names: 218902056

Gene position: 891415-890900 (Counterclockwise)

Preceding gene: 218902057

Following gene: 218902055

Centisome position: 16.81

GC content: 38.18

Gene sequence:

>516_bases
ATGAGTAAAAAAATTGCTATTTTAATAACGGATTATTTCGAGGACACAGAATACACAGAGCCAGCAGAAGCTTTTAAGCA
AAAGGGATATGAATTAACAACTATTGAAGCAGAAAAAGGTAAAACAGTACACGGTAAACAAGGAAAAAGCGAAGTCGTAA
TTGATAAAGGTATCGATAATGTTTCTCCAGAAAACTTTGATGCACTCTTCATACCAGGCGGATTTTCTCCAGATATACTT
CGTGCAGATGAGCGTTTCGTTCGCTTTAGTAAAGCATTTATGGATGCGGAAAAACCTGTTTTCGCTATTTGTCACGGACC
TCAGCTACTCATCACTGCACAAACACTTGAAGGACGTGATGTCACTGGATATAAATCTATTGAAGTCGATTTAAAAAACG
CCGGCGGAAACTTTCACGATAAAGAAGTAGTTGTATGCCAAAATCAGCTGGTCACAAGTAGACAACCAGAAGACATCCCA
GCGTTTATTGAAGAATCGTTACGTATATTGAGATAG

Upstream 100 bases:

>100_bases
GAATTTACAACTTAGCAAACACTTCAATTGAATCATTTATAGAAGGTATTGCCCAAGGACGATTTTGGAATCGATAATAT
AATGTAAGGAGCGGATTAGA

Downstream 100 bases:

>100_bases
TTATTAGAGGTTAATCAAAGTAGCTATTTAGCTACTTTGATTAACCTTTTTATTTGTATGAAAAACAAAAAAGAATCTTA
TTTTTAATGATCTTTTCATA

Product: thiJ/pfpI family protein

Products: NA

Alternate protein names: GSP18 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSKKIAILITDYFEDTEYTEPAEAFKQKGYELTTIEAEKGKTVHGKQGKSEVVIDKGIDNVSPENFDALFIPGGFSPDIL
RADERFVRFSKAFMDAEKPVFAICHGPQLLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVVVCQNQLVTSRQPEDIP
AFIEESLRILR

Sequences:

>Translated_171_residues
MSKKIAILITDYFEDTEYTEPAEAFKQKGYELTTIEAEKGKTVHGKQGKSEVVIDKGIDNVSPENFDALFIPGGFSPDIL
RADERFVRFSKAFMDAEKPVFAICHGPQLLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVVVCQNQLVTSRQPEDIP
AFIEESLRILR
>Mature_170_residues
SKKIAILITDYFEDTEYTEPAEAFKQKGYELTTIEAEKGKTVHGKQGKSEVVIDKGIDNVSPENFDALFIPGGFSPDILR
ADERFVRFSKAFMDAEKPVFAICHGPQLLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVVVCQNQLVTSRQPEDIPA
FIEESLRILR

Specific function: Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins [H]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain [H]

Homologues:

Organism=Escherichia coli, GI87082219, Length=170, Percent_Identity=60, Blast_Score=220, Evalue=4e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006286
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: 3.4.-.-

Molecular weight: Translated: 19142; Mature: 19011

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKIAILITDYFEDTEYTEPAEAFKQKGYELTTIEAEKGKTVHGKQGKSEVVIDKGIDN
CCCEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCCEEEEECCCCC
VSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGPQLLITAQTLEGRD
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCC
VTGYKSIEVDLKNAGGNFHDKEVVVCQNQLVTSRQPEDIPAFIEESLRILR
CCCCEEEEEEEECCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SKKIAILITDYFEDTEYTEPAEAFKQKGYELTTIEAEKGKTVHGKQGKSEVVIDKGIDN
CCEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCCEEEEECCCCC
VSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGPQLLITAQTLEGRD
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCC
VTGYKSIEVDLKNAGGNFHDKEVVVCQNQLVTSRQPEDIPAFIEESLRILR
CCCCEEEEEEEECCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377; 9298659 [H]