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The map label for this gene is yndE [H]

Identifier: 218901950

GI number: 218901950

Start: 790555

End: 791664

Strand: Reverse

Name: yndE [H]

Synonym: BCAH820_0832

Alternate gene names: 218901950

Gene position: 791664-790555 (Counterclockwise)

Preceding gene: 218901951

Following gene: 218901949

Centisome position: 14.93

GC content: 32.7

Gene sequence:

>1110_bases
ATGGCTGGACAAGATAAAACACATACTGTTTCCCCTTATTTCACATTCCTTCTATTACACTCCCTTCAAATTGGAGTAGG
AGTGTTGGGATACCAAAGGATAATTGCGCAATTTGCCGGTTATGATGCTTGGATTTCTCTTATTATCGCCGGTATTGCAA
CTCATATCGTTTTATTTTGTATGCTTAAAATGTTAGAAAAAGATAATGATTTAATGAATATTCATACGACATGTTTCGGA
AAATGGATTGGAAAAATTTTTTCCATATGCTTTGCCGCATACCTTTTATTATTTTGCCTTACTGTTCTTCGTACGTATAT
TGAAGTTATTCAAGTTTGGGTCTTTCCTACAATTAAACCGTGGAAATTAACTTTACTATTTTTACTTGTAGCTTATTACA
TAATTAGGGGCGGTTTTCGTTCTGTAACTGGAATTTGTTTTTGGGGCGTTATCATACCGATTTTCGTCCTGTTATTCTTA
GTTTTTCCGATGAAATATGCACATGTCCGTAACATTTTCCCAATTCTAAATCATTCACCTTTAGAAATTCTAACTTCAGC
CAAAGCATCTGCATTAGAATTTCTTGGATTTGAAGCAATCCTTGTTTTTTATCCATTTATTAAAAAAGGAAAATCGTTAA
ATAAATGGGCACATGGTGGTATTGCTTTTACGACAATTCTATACGTAATACTAGCCATCGTTTCCCTTATGTACTATAGC
CCAGGGCAACTCCATCATACAATTTGGCCAACATTAACGATGCTAAAAATCATTAAAGTTCCTTTTATCCAAAGGTTTGA
GTACATTATTATTTTCCTATGGTATCTTATTATTTTACCTAATATTTGTTTAACAATTTGGTCTTCTTGTTGCATTAGTA
AAAAGTCTTTTCATATACCATTTAAAATTACATTACCATTTTTTATCGCTGCTATATTTATTTCATCCTTGTTTTTCACA
AACCGTGAAGGTATCAACACATTAAACACAGTCCTATCTCAAGCTGGCTTATATATTGTATACGCTTATATCCCGATTTT
ATTTGTATTCCATTCACTACGATGGCATTTCAAAAATCGGTCAAAAAAATCTTCACCCGACACACCATAA

Upstream 100 bases:

>100_bases
CATGAAACAAATTCAAGATATGTATCCTAACGTAGACATTGCTGTTAATGTAAAAATTAATGTCGTACAATCTGGTATCG
GCGAATAGTGAGGTGCTATC

Downstream 100 bases:

>100_bases
TCTCTGATACAATTTGATTAATACATTTGTAAAGGGGACAAGCGTATGAAGAAATATGTATTTTCTTTACTTGCAGTACT
GAGTTTAATTCTTGCTGGAT

Product: spore germination protein GerYB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MAGQDKTHTVSPYFTFLLLHSLQIGVGVLGYQRIIAQFAGYDAWISLIIAGIATHIVLFCMLKMLEKDNDLMNIHTTCFG
KWIGKIFSICFAAYLLLFCLTVLRTYIEVIQVWVFPTIKPWKLTLLFLLVAYYIIRGGFRSVTGICFWGVIIPIFVLLFL
VFPMKYAHVRNIFPILNHSPLEILTSAKASALEFLGFEAILVFYPFIKKGKSLNKWAHGGIAFTTILYVILAIVSLMYYS
PGQLHHTIWPTLTMLKIIKVPFIQRFEYIIIFLWYLIILPNICLTIWSSCCISKKSFHIPFKITLPFFIAAIFISSLFFT
NREGINTLNTVLSQAGLYIVYAYIPILFVFHSLRWHFKNRSKKSSPDTP

Sequences:

>Translated_369_residues
MAGQDKTHTVSPYFTFLLLHSLQIGVGVLGYQRIIAQFAGYDAWISLIIAGIATHIVLFCMLKMLEKDNDLMNIHTTCFG
KWIGKIFSICFAAYLLLFCLTVLRTYIEVIQVWVFPTIKPWKLTLLFLLVAYYIIRGGFRSVTGICFWGVIIPIFVLLFL
VFPMKYAHVRNIFPILNHSPLEILTSAKASALEFLGFEAILVFYPFIKKGKSLNKWAHGGIAFTTILYVILAIVSLMYYS
PGQLHHTIWPTLTMLKIIKVPFIQRFEYIIIFLWYLIILPNICLTIWSSCCISKKSFHIPFKITLPFFIAAIFISSLFFT
NREGINTLNTVLSQAGLYIVYAYIPILFVFHSLRWHFKNRSKKSSPDTP
>Mature_368_residues
AGQDKTHTVSPYFTFLLLHSLQIGVGVLGYQRIIAQFAGYDAWISLIIAGIATHIVLFCMLKMLEKDNDLMNIHTTCFGK
WIGKIFSICFAAYLLLFCLTVLRTYIEVIQVWVFPTIKPWKLTLLFLLVAYYIIRGGFRSVTGICFWGVIIPIFVLLFLV
FPMKYAHVRNIFPILNHSPLEILTSAKASALEFLGFEAILVFYPFIKKGKSLNKWAHGGIAFTTILYVILAIVSLMYYSP
GQLHHTIWPTLTMLKIIKVPFIQRFEYIIIFLWYLIILPNICLTIWSSCCISKKSFHIPFKITLPFFIAAIFISSLFFTN
REGINTLNTVLSQAGLYIVYAYIPILFVFHSLRWHFKNRSKKSSPDTP

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 42431; Mature: 42299

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCC
>Mature Secondary Structure 
AGQDKTHTVSPYFTFLLLHSLQIGVGVLGYQRIIAQFAGYDAWISLIIAGIATHIVLFC
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH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CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]