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The map label for this gene is rbsD

Identifier: 218901862

GI number: 218901862

Start: 698542

End: 698937

Strand: Direct

Name: rbsD

Synonym: BCAH820_0723

Alternate gene names: 218901862

Gene position: 698542-698937 (Clockwise)

Preceding gene: 218901861

Following gene: 218901863

Centisome position: 13.17

GC content: 37.88

Gene sequence:

>396_bases
GTGAAAAAGCACGGCGTATTAAACAGTGAGATTGCAGCAGTGCTTGCTTCACTTGGGCATACGGATACGATTGTAATCGC
TGATTGCGGTTTACCAATTCCTGACGGAGTAAAGAGAATTGATCTAGCTGTTGAAATAGGAAAACCTAGCTTTTTAGATG
TATTGCAAGTGGTAGCGGATGATATGGCAATTGAAAAAGTGACGTTAGCAGAAGAAGTCATTAACAACAATGCGGAAGTA
AATAAAGAAATCGAGCTAAAATTAATAGAACCAGCGTTTGAATATGTATGTCATGAACAATTTAAAGAGCATACAAAGAA
AGCGAAAGCTATTATTCGTACAGGTGAGGCTACGCCTTATGCCAATGTAATTTTACATGCAGGCGTGATTTTTTAA

Upstream 100 bases:

>100_bases
GTTTTGCGAATATTGCTGGTGGTCTTTCTGTAACGAAGCTTGGGGCGCAAGGCGGTATGCCAACGAGAGATAGAGTACGT
GAAGTGCAGGTGATTGTCGG

Downstream 100 bases:

>100_bases
TAAAGGGAAGTGATGGGAATGCGTATTGAAATGAAAAATATTTCAAAGGCGTTCAATGGCAATCCTGTTTTGAAGAATGC
ACAGTTTATGATTGAAACAG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNAEV
NKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF

Sequences:

>Translated_131_residues
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNAEV
NKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF
>Mature_131_residues
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNAEV
NKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=45.3237410071942, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_BACAA (C3P0E9)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002865262.1
- ProteinModelPortal:   C3P0E9
- SMR:   C3P0E9
- EnsemblBacteria:   EBBACT00000127734
- GeneID:   7848110
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_0750
- GeneTree:   EBGT00050000001557
- ProtClustDB:   PRK11797
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14271; Mature: 14271

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVAD
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
DMAIEKVTLAEEVINNNAEVNKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANVILHAGVIF
HHHHHHCCCCC
>Mature Secondary Structure
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVAD
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
DMAIEKVTLAEEVINNNAEVNKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANVILHAGVIF
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA