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The map label for this gene is yokA [H]

Identifier: 218901691

GI number: 218901691

Start: 529465

End: 531015

Strand: Reverse

Name: yokA [H]

Synonym: BCAH820_0551

Alternate gene names: 218901691

Gene position: 531015-529465 (Counterclockwise)

Preceding gene: 218901693

Following gene: 218901680

Centisome position: 10.01

GC content: 33.78

Gene sequence:

>1551_bases
TTGTACCGTCCTGAATCTCTTGATGTATGTATATATTTGAGAAAGAGTCGTAAAGACGTAGAAGAAGAACGACGCGCAAT
AGAAGAAGGTAGTAGTTATAACGCCTTAGAACGACATCGTAAACGTTTATTCGCCATAGCTAAAGCTGAAAACCATAATA
TTATTGATATATTCGAAGAGGTTGCTTCTGGAGAATCCATCCAAGAAAGACCTCAAATGCAACAATTACTTCGTAAATTA
GAAGGAAATGAAATTGATGGTGTGTTAGTAATTGACTTAGATCGACTTGGACGTGGAGACATGTTAGATGCTGGAATGAT
TGACCGGGCCTTTCGTTATTCTTCGACCAAAATAATTACTCCTACGGATGTATATGATCCGGATGAAGAATCATGGGAGC
TTGTCTTCGGTATTAAATCTTTAATATCAAGGCAAGAACTAAAATCTATCACAAAGCGTCTTCAAAATGGAAGAATAGAC
TCTGTTAAGGAAGGAAAACACATTGGTAAAAAGCCGCCTTACGGTTATTTAAAAGATGAAAACCTAAGATTGTATCCTGA
TCCAGAAAAAGCTTGGATTGTAAAAAAAATATTTGAATTGATGTGTGACGGTAAAGGAAGGCAAATGATTGCTGCTGAAT
TGGACAGGCTAGGAATAGATCCCCCTGTGACAAAAAGAGGCGCTTGGGATTCTTCTACAATTACATCCATCATAAAAAAT
GAGGTTTACACTGGAGTTATTGTGTGGGGGAAATTTAAACATAAAAAAAGAAATGGGAAATATACACGTCATAAAAACCC
TCAAGAAAAGTGGATTATGTATGAAAATGCCCATGAACCAATCATTTCTAAGGAGTTATTTGATGCTGCGAATGAAGCGC
ACAGTAGTAGACATAAACCCGCTGTTATTACTTCAAAAGAATTAACGAATCCCTTAGCTGGCATTTTAAAATGTAAATTA
TGCGGATACACAATGTTAATTCAAACTAGAAAAGATAGACCTCATAATTACCTGCGCTGCAATAATCCTGCATGCAAAGG
TAAACAAAAGCAATCTGTGTTTAATCTAGTAGAAGAAAAACTACTATATTCCTTGCAACAAATAGTCGATGAATACCAGG
CTCAAAAAGTAGAAGAAGTTGAAATAGATGATTCGAAACTTATATCATTTAAAGAAAAAGCAATAATTTCAAAAGAGAAA
GAATTGAAAGAGCTGCAAGCTCAAAAAGGAAATTTACATGATCTTCTAGAACAAGGTATTTATACCGTGGAAATTTTCTT
GGAGAGACAAAAGAATCTTGTCGAACGGATTACCTCTATTGAAAATGATATAGAAGTACTACAAAAGGAAATTGAAACAG
AACAAATTAAAGAACATAATAAAACCGAGTTTATTCCTGCATTAAAAACTGTTATTGAATCTTATCATAAAACAACGAAC
ATCGAATTGAAAAATCAATTATTAAAAACTATACTAAGTACAGTAACATATTATCGTCATCCAGACTGGAAAACGAATGA
ATTCGAAATTCAAGTTTACTTCAAAATATAA

Upstream 100 bases:

>100_bases
TAATCCTCATTTCGACAAAAAGAATGCTTTTACCATTCTTTTTTTCTATGCCATTTTTGTGTATAGTGAATTTAATACAA
TTGTACAGAGGTGATTTGAA

Downstream 100 bases:

>100_bases
AAAAGCCTGTAAATACAGGCTTTCTCACTGCGTGTACATGGTGGAGTATTAAACTGGTTCACTTCCCCATATCCAAACAT
ATTACACTTCTTCATTAATT

Product: site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MYRPESLDVCIYLRKSRKDVEEERRAIEEGSSYNALERHRKRLFAIAKAENHNIIDIFEEVASGESIQERPQMQQLLRKL
EGNEIDGVLVIDLDRLGRGDMLDAGMIDRAFRYSSTKIITPTDVYDPDEESWELVFGIKSLISRQELKSITKRLQNGRID
SVKEGKHIGKKPPYGYLKDENLRLYPDPEKAWIVKKIFELMCDGKGRQMIAAELDRLGIDPPVTKRGAWDSSTITSIIKN
EVYTGVIVWGKFKHKKRNGKYTRHKNPQEKWIMYENAHEPIISKELFDAANEAHSSRHKPAVITSKELTNPLAGILKCKL
CGYTMLIQTRKDRPHNYLRCNNPACKGKQKQSVFNLVEEKLLYSLQQIVDEYQAQKVEEVEIDDSKLISFKEKAIISKEK
ELKELQAQKGNLHDLLEQGIYTVEIFLERQKNLVERITSIENDIEVLQKEIETEQIKEHNKTEFIPALKTVIESYHKTTN
IELKNQLLKTILSTVTYYRHPDWKTNEFEIQVYFKI

Sequences:

>Translated_516_residues
MYRPESLDVCIYLRKSRKDVEEERRAIEEGSSYNALERHRKRLFAIAKAENHNIIDIFEEVASGESIQERPQMQQLLRKL
EGNEIDGVLVIDLDRLGRGDMLDAGMIDRAFRYSSTKIITPTDVYDPDEESWELVFGIKSLISRQELKSITKRLQNGRID
SVKEGKHIGKKPPYGYLKDENLRLYPDPEKAWIVKKIFELMCDGKGRQMIAAELDRLGIDPPVTKRGAWDSSTITSIIKN
EVYTGVIVWGKFKHKKRNGKYTRHKNPQEKWIMYENAHEPIISKELFDAANEAHSSRHKPAVITSKELTNPLAGILKCKL
CGYTMLIQTRKDRPHNYLRCNNPACKGKQKQSVFNLVEEKLLYSLQQIVDEYQAQKVEEVEIDDSKLISFKEKAIISKEK
ELKELQAQKGNLHDLLEQGIYTVEIFLERQKNLVERITSIENDIEVLQKEIETEQIKEHNKTEFIPALKTVIESYHKTTN
IELKNQLLKTILSTVTYYRHPDWKTNEFEIQVYFKI
>Mature_516_residues
MYRPESLDVCIYLRKSRKDVEEERRAIEEGSSYNALERHRKRLFAIAKAENHNIIDIFEEVASGESIQERPQMQQLLRKL
EGNEIDGVLVIDLDRLGRGDMLDAGMIDRAFRYSSTKIITPTDVYDPDEESWELVFGIKSLISRQELKSITKRLQNGRID
SVKEGKHIGKKPPYGYLKDENLRLYPDPEKAWIVKKIFELMCDGKGRQMIAAELDRLGIDPPVTKRGAWDSSTITSIIKN
EVYTGVIVWGKFKHKKRNGKYTRHKNPQEKWIMYENAHEPIISKELFDAANEAHSSRHKPAVITSKELTNPLAGILKCKL
CGYTMLIQTRKDRPHNYLRCNNPACKGKQKQSVFNLVEEKLLYSLQQIVDEYQAQKVEEVEIDDSKLISFKEKAIISKEK
ELKELQAQKGNLHDLLEQGIYTVEIFLERQKNLVERITSIENDIEVLQKEIETEQIKEHNKTEFIPALKTVIESYHKTTN
IELKNQLLKTILSTVTYYRHPDWKTNEFEIQVYFKI

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 60125; Mature: 60125

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRPESLDVCIYLRKSRKDVEEERRAIEEGSSYNALERHRKRLFAIAKAENHNIIDIFEE
CCCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
VASGESIQERPQMQQLLRKLEGNEIDGVLVIDLDRLGRGDMLDAGMIDRAFRYSSTKIIT
HHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEC
PTDVYDPDEESWELVFGIKSLISRQELKSITKRLQNGRIDSVKEGKHIGKKPPYGYLKDE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC
NLRLYPDPEKAWIVKKIFELMCDGKGRQMIAAELDRLGIDPPVTKRGAWDSSTITSIIKN
CEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
EVYTGVIVWGKFKHKKRNGKYTRHKNPQEKWIMYENAHEPIISKELFDAANEAHSSRHKP
HHHEEEEEEECHHHHCCCCCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
AVITSKELTNPLAGILKCKLCGYTMLIQTRKDRPHNYLRCNNPACKGKQKQSVFNLVEEK
CEEEHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
LLYSLQQIVDEYQAQKVEEVEIDDSKLISFKEKAIISKEKELKELQAQKGNLHDLLEQGI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
YTVEIFLERQKNLVERITSIENDIEVLQKEIETEQIKEHNKTEFIPALKTVIESYHKTTN
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
IELKNQLLKTILSTVTYYRHPDWKTNEFEIQVYFKI
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MYRPESLDVCIYLRKSRKDVEEERRAIEEGSSYNALERHRKRLFAIAKAENHNIIDIFEE
CCCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
VASGESIQERPQMQQLLRKLEGNEIDGVLVIDLDRLGRGDMLDAGMIDRAFRYSSTKIIT
HHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEC
PTDVYDPDEESWELVFGIKSLISRQELKSITKRLQNGRIDSVKEGKHIGKKPPYGYLKDE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC
NLRLYPDPEKAWIVKKIFELMCDGKGRQMIAAELDRLGIDPPVTKRGAWDSSTITSIIKN
CEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
EVYTGVIVWGKFKHKKRNGKYTRHKNPQEKWIMYENAHEPIISKELFDAANEAHSSRHKP
HHHEEEEEEECHHHHCCCCCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
AVITSKELTNPLAGILKCKLCGYTMLIQTRKDRPHNYLRCNNPACKGKQKQSVFNLVEEK
CEEEHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
LLYSLQQIVDEYQAQKVEEVEIDDSKLISFKEKAIISKEKELKELQAQKGNLHDLLEQGI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
YTVEIFLERQKNLVERITSIENDIEVLQKEIETEQIKEHNKTEFIPALKTVIESYHKTTN
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
IELKNQLLKTILSTVTYYRHPDWKTNEFEIQVYFKI
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]