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The map label for this gene is czcR [H]

Identifier: 218901404

GI number: 218901404

Start: 204190

End: 205056

Strand: Reverse

Name: czcR [H]

Synonym: BCAH820_0223

Alternate gene names: 218901404

Gene position: 205056-204190 (Counterclockwise)

Preceding gene: 218901413

Following gene: 218901402

Centisome position: 3.87

GC content: 35.29

Gene sequence:

>867_bases
ATGGAATTAAGAGACTTGCAAATCTTCCAGAGCGTTGCCGACCAAGGTAGTGTAAGTAGCGCAGCAAAGGAATTAAATTA
CGTACAATCAAATGTAACTGCACGTATTAAACAACTAGAAAACGAGCTAAAAACACCGCTCTTTTATCGTCATAAGCGAG
GCATGACTTTAACAGCTGAAGGAAGAAAAATGCTCGTTTATGTTAATAAAATTTTGCAAGATGTTGACGAGCTAAAACAA
GTATTTTTAGATAGCGAAACACCCTCTGGCATATTAAAAATCGGTACTGTCGAAACAGTAAGTACATTACCTACCATTTT
ATCTTCTTACTATAAAAGCTATCCGAACGTCGATTTGTCATTACAAGCAGGTTTAACAGAAGAATTAATTAGAGAAGTAC
TCGATCATCAATTAGATGGAGCTTTTATATCAGGACCAATAAAACATCCACTTATTGAACAATACGATGTTAGTACAGAA
AAATTAATGCTTGTAACACAAAATAAAGCTTTTCATATTGAAGAATTTACAACAACACCTCTACTCGTTTTTAATCAAGG
ATGTGGATACCGTTCTAAACTAGAACGATGGCTGAAAGATGAAGGTTTGCTTCCAAAAAGAATTATGGAATTCAATATAT
TAGAGACCATATTAAACAGTGTTGCACTCGGCCTTGGAATTACACTCGTACCACAGTCTGCTGTCCATCATCTTTCTAAA
GCAGGTAAAGTTCATTGCCATGCAATTCCTGAGAAATATGGTAGTATTTCAACGGTTTTCATACGCCGCAAAGATAGCTA
TATGACGAATTCAATGCGTAGCTTTTTAAAAACAATCGAAGAGCACCACCACATTAATATGCTTTAA

Upstream 100 bases:

>100_bases
ACAAAGAGAATTGTAAAAGAAAAAATATATCACGTAAAATGATTCAAAATGATGTTAACTATCATTTATAATGATAGTTA
ACATCAAGGAGGACAGTATT

Downstream 100 bases:

>100_bases
AAGACATTCTTACACGAATGTCTTTTTTTCTTACAAAAGTGTAAGTCTTCCGTAAGCTAATTCGATAGTTGCAGGCGATC
ATATTTCCTATAATTAAGAC

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVYVNKILQDVDELKQ
VFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTE
KLMLVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAVHHLSK
AGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML

Sequences:

>Translated_288_residues
MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVYVNKILQDVDELKQ
VFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTE
KLMLVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAVHHLSK
AGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML
>Mature_288_residues
MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVYVNKILQDVDELKQ
VFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTE
KLMLVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAVHHLSK
AGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=285, Percent_Identity=30.1754385964912, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=26.056338028169, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=24.8275862068966, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=26.3157894736842, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787530, Length=297, Percent_Identity=24.5791245791246, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=26.510067114094, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=26.9076305220884, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=26.1044176706827, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=24.390243902439, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=25.7936507936508, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=25.609756097561, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=160, Percent_Identity=30.625, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787601, Length=155, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789639, Length=137, Percent_Identity=29.1970802919708, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=250, Percent_Identity=22.4, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32675; Mature: 32675

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAE
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEC
GRKMLVYVNKILQDVDELKQVFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLS
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
LQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFHIEEFTTTP
ECCCCHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCCCCCEEEEEECCCEEEEECCCCCC
LLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAVHHLSK
EEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
AGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML
CCCEEEEECHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAE
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEC
GRKMLVYVNKILQDVDELKQVFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLS
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
LQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFHIEEFTTTP
ECCCCHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCCCCCEEEEEECCCEEEEECCCCCC
LLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAVHHLSK
EEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
AGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML
CCCEEEEECHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA