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The map label for this gene is ybfP [H]

Identifier: 218901392

GI number: 218901392

Start: 191794

End: 192693

Strand: Direct

Name: ybfP [H]

Synonym: BCAH820_0211

Alternate gene names: 218901392

Gene position: 191794-192693 (Clockwise)

Preceding gene: 218901390

Following gene: 218901393

Centisome position: 3.62

GC content: 36.22

Gene sequence:

>900_bases
ATGCATGAAGAATATAAAGAGATGATAAAAAAAGCTATTGAATATATAGAGAATCACTTACATGAGGAGCTTACAACAGA
AAGAGTAGCATCTCACAGTGCAGTATCGATGTATCATTTTCATCGTATTTTTCAAAGGTATATTGGGATGAGTGTAACGG
ATTATATTCGAAAGAGAAGGTTAACTCATGCTGCGCAGGTTTTAGTGTCGACCGAGAGAGCTGTTATTGATATTGCGATG
CAATATGGTTTTTCCTCACAAGAGGCGTTTACGAGAGCTTTTAAAAGAATGTTTCAATTGCCACCAAAGAAATATCGAAA
GTACTTCCAGTCATTTTATATAGAAAGAGAGGGTGTTTCAATGCAAAAGGGTATACCGAAAGGATGGATCTTAAGTGGAA
GTCATCCTGCTGAATATGAGATGGGTTTAGATTATGAAGTTGTCCATCAAGGGAAGGTATCTGCATACATAAAAGCAAAA
GAGAATGTTACGCACGGAGGATTTTCAACATTAATGCAAATGTTCCGAGCGGATAAATATGTAGGGAAGAGATTACGTTT
TACAGCATTTGTTAAGAGTGAAAATGTAAGAGATTGGGCAGGATTGTGGATGCGAGTAGACGGAAAAGAGACAGAACCGC
TTGCTATGGATAATATGCAAAATCGTCCCATTAAAAATACGAATAATTGGCAATCGTACTCGGTTGTATTAGATATAAAA
GAAGGAGCGCTTGGTATTGCATTTGGTGTTTTATTATCAGGAGAAGGTTGTGTGTGGCTAGATAGTATTCGATTTGATGA
AGTAGATGAAAAAATTCCTACAACAGATTTGGCAGAGAACTTTTATGAAACACTTTTAGAAGAACCGGTGAATCTACAAT
TTGAAGAAGTAGAAAAATAA

Upstream 100 bases:

>100_bases
AAATAAATTATTATCCTGTAGCTACAAGGGTTAATCCGCAATTTAAATCAAAAAAAATTTGTATGTATATGGTAAATTTA
AATTGTGAGGAGGGACTAAA

Downstream 100 bases:

>100_bases
AAAACAAGGAGAAAAGATATGCTCAAATATGTAAAACTAATAAGTATTAGTTTAGTAATATCGTCTTGCATTATGGGAAT
TAATTATTTAGTTAGCTATA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MHEEYKEMIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRRLTHAAQVLVSTERAVIDIAM
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EGALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEEVEK

Sequences:

>Translated_299_residues
MHEEYKEMIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRRLTHAAQVLVSTERAVIDIAM
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EGALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEEVEK
>Mature_299_residues
MHEEYKEMIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRRLTHAAQVLVSTERAVIDIAM
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EGALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEEVEK

Specific function: Probable transcriptional regulator [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=100, Percent_Identity=40, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=38.7755102040816, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790497, Length=102, Percent_Identity=38.2352941176471, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34873; Mature: 34873

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEEYKEMIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTHAAQVLVSTERAVIDIAMQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
MQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAKENVTHGGFSTLMQMFRADKY
HHHCCCCCEEECCCCCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
VGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
HCCHHEEEEEECCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
EGALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEEVEK
CCCHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MHEEYKEMIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTHAAQVLVSTERAVIDIAMQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
MQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAKENVTHGGFSTLMQMFRADKY
HHHCCCCCEEECCCCCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
VGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
HCCHHEEEEEECCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
EGALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEEVEK
CCCHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]