Click here to switch to the map view.

The map label for this gene is rplW

Identifier: 218901316

GI number: 218901316

Start: 122603

End: 122893

Strand: Direct

Name: rplW

Synonym: BCAH820_0124

Alternate gene names: 218901316

Gene position: 122603-122893 (Clockwise)

Preceding gene: 218901315

Following gene: 218901317

Centisome position: 2.31

GC content: 39.86

Gene sequence:

>291_bases
ATGAGAGATCCTCGTGATATCATTAAGCGCCCAGTTATCACTGAACGTTCTATGGAAATGATGGCTGAAAAAAAATACAC
GTTCGATGTGGACGTTAAATCTAATAAAACAGAAGTTAAAGATGCTCTTGAAGCGATCTTTGGTGTTAAAGTAGAAAAAG
TGAACATCATGAACTACAAGCCGAAAGCAAAACGCGTTGGTCGTCACGCTGGTTTTACTAGCCGTCGTCGTAAAGCAATC
GTTAAGCTAACTGCTGACAGCAAAGAAATCGAAATCTTCCAAGGCGTTTAA

Upstream 100 bases:

>100_bases
TAATCACTGCTGATGGCGTAAACGTTTTAGACGTGCTTCATCATGATAAGCTAATCATGACAAAAGCGGCAGTGGAAAAA
GTAGAGGAGGTGCTTGCATA

Downstream 100 bases:

>100_bases
TTCTTACTAAAGAAGGAGGGAAATTGAGATGGGAATTAAAAAGTATAATCCAACTACTAACGGTCGTCGTAACATGACTA
CGAATGATTTCGCTGAAATC

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYKPKAKRVGRHAGFTSRRRKAI
VKLTADSKEIEIFQGV

Sequences:

>Translated_96_residues
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYKPKAKRVGRHAGFTSRRRKAI
VKLTADSKEIEIFQGV
>Mature_96_residues
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYKPKAKRVGRHAGFTSRRRKAI
VKLTADSKEIEIFQGV

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_BACAA (C3P9Q7)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002864763.1
- ProteinModelPortal:   C3P9Q7
- SMR:   C3P9Q7
- EnsemblBacteria:   EBBACT00000124956
- GeneID:   7852291
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_0128
- GeneTree:   EBGT00050000002796
- ProtClustDB:   PRK05738
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_B
- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 11114; Mature: 11114

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYK
CCCHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
PKAKRVGRHAGFTSRRRKAIVKLTADSKEIEIFQGV
CHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECC
>Mature Secondary Structure
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYK
CCCHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
PKAKRVGRHAGFTSRRRKAIVKLTADSKEIEIFQGV
CHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA