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The map label for this gene is rpoB1 [H]

Identifier: 218901305

GI number: 218901305

Start: 108407

End: 108532

Strand: Direct

Name: rpoB1 [H]

Synonym: BCAH820_0113

Alternate gene names: 218901305

Gene position: 108407-108532 (Clockwise)

Preceding gene: 218901304

Following gene: 218901306

Centisome position: 2.04

GC content: 39.68

Gene sequence:

>126_bases
TTGACAGGTCAACTAGTTCAATACGGACGCCACCGCCAACGAAGAAGTTATGCCCGTATTAGTGAAGTATTAGAGTTACC
AAATCTTATCGAAATTCAAACCTCTTCTTATCAAGTGGTTTCTTGA

Upstream 100 bases:

>100_bases
GAAAAAAGACTACGCTAAATAGCAGTAGTTGTATTTATTTGTGATTTTGCACAAATTTTTTTGTGCATTTATAATACTCA
TGATTTGAGGGGTGAAGCAG

Downstream 100 bases:

>100_bases
TGAGGGTTTGCGAGAAATGTTCCAAGACATTTCTCCGATTGAAGACTTTACGGGAAATCTATCGCTTGAATTTATCGACT
ACAGCTTAGGTGAACCTAAA

Product: DNA-directed RNA polymerase, beta subunit

Products: NA

Alternate protein names: RNAP subunit beta; RNA polymerase subunit beta; Transcriptase subunit beta [H]

Number of amino acids: Translated: 41; Mature: 40

Protein sequence:

>41_residues
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQVVS

Sequences:

>Translated_41_residues
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQVVS
>Mature_40_residues
TGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQVVS

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG0085

COG function: function code K; DNA-directed RNA polymerase, beta subunit/140 kD subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010243
- InterPro:   IPR019462
- InterPro:   IPR015712
- InterPro:   IPR007120
- InterPro:   IPR007121
- InterPro:   IPR007644
- InterPro:   IPR007642
- InterPro:   IPR007645
- InterPro:   IPR007641
- InterPro:   IPR014724 [H]

Pfam domain/function: PF04563 RNA_pol_Rpb2_1; PF04561 RNA_pol_Rpb2_2; PF04565 RNA_pol_Rpb2_3; PF10385 RNA_pol_Rpb2_45; PF00562 RNA_pol_Rpb2_6; PF04560 RNA_pol_Rpb2_7 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 4808; Mature: 4676

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQVVS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECC
>Mature Secondary Structure 
TGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQVVS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA