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The map label for this gene is 218884734

Identifier: 218884734

GI number: 218884734

Start: 1319974

End: 1320174

Strand: Reverse

Name: 218884734

Synonym: DKAM_1423

Alternate gene names: NA

Gene position: 1320174-1319974 (Counterclockwise)

Preceding gene: 218884735

Following gene: 218884733

Centisome position: 96.7

GC content: 43.28

Gene sequence:

>201_bases
ATGAACTGGCTACTTAGAAAATGCAGTAAATGTGGTAGGTATACTTTAAGCAGGGATAGATGCCCGTACTGCGGGGGAGA
GCTAATAGTACCCCATCCACCACGCTTCAGCCCTATTGATAAATACGTGGAGTATAGGCTCGAGGAAAAACTCTCAAAGG
GAATTATCAAGCTAGATGAAAAACCACCATATAAGCCTTGA

Upstream 100 bases:

>100_bases
ACTATAAAACAGCTGAATCAGTAGTTGAGAAAATACTAAAGAAAGCTGAAGAGGCTAGCAGCGAATATGGTGTAATATTC
AAGGGAGAACGTGAGAAAGC

Downstream 100 bases:

>100_bases
TTCATGGAACTAACAATTTAAAAACCCTGTGCATAATCAAAATTAGTAAAGGATGCCGCCGTAGTATAGCCCGGCCTAGT
ATGCGGGCCTGTCGAGCCCG

Product: Nucleolar RNA-binding protein Nop10p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MNWLLRKCSKCGRYTLSRDRCPYCGGELIVPHPPRFSPIDKYVEYRLEEKLSKGIIKLDEKPPYKP

Sequences:

>Translated_66_residues
MNWLLRKCSKCGRYTLSRDRCPYCGGELIVPHPPRFSPIDKYVEYRLEEKLSKGIIKLDEKPPYKP
>Mature_66_residues
MNWLLRKCSKCGRYTLSRDRCPYCGGELIVPHPPRFSPIDKYVEYRLEEKLSKGIIKLDEKPPYKP

Specific function: Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA

COG id: COG2260

COG function: function code J; Predicted Zn-ribbon RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NOP10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOP10_DESK1 (B8D6L8)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002429116.1
- GeneID:   7171457
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1423
- HOGENOM:   HBG498094
- OMA:   PHPPRFS
- ProtClustDB:   CLSK730502
- HAMAP:   MF_00803
- InterPro:   IPR007264

Pfam domain/function: PF04135 Nop10p

EC number: NA

Molecular weight: Translated: 7813; Mature: 7813

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
6.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWLLRKCSKCGRYTLSRDRCPYCGGELIVPHPPRFSPIDKYVEYRLEEKLSKGIIKLDE
CCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCEECCC
KPPYKP
CCCCCC
>Mature Secondary Structure
MNWLLRKCSKCGRYTLSRDRCPYCGGELIVPHPPRFSPIDKYVEYRLEEKLSKGIIKLDE
CCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCEECCC
KPPYKP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA