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The map label for this gene is yfhQ [C]

Identifier: 218884714

GI number: 218884714

Start: 1305584

End: 1306288

Strand: Reverse

Name: yfhQ [C]

Synonym: DKAM_1403

Alternate gene names: 218884714

Gene position: 1306288-1305584 (Counterclockwise)

Preceding gene: 218884715

Following gene: 218884713

Centisome position: 95.68

GC content: 44.26

Gene sequence:

>705_bases
ATGCTAAGGATAGTACTAGTGGGTATTGAGGGTCCAGTGAATCTTGGAGTCATAGCTAGAACCTGTGTAAACTTCAACGT
TGATGAGCTATACATTGTTAAACCAGTAGCCAGTATCGAGGAGGCTTTAAACTACGCCGCCAGAGGAAAAGACTTCCTGC
TTAAAGCCAGAGTCACTGATTCACTCGATGAAGCCATTAAGGGAGTTGACATGGTCGCGGCTACCAGTGATGAAGGATAT
AGTGCAGGAGACATGCTTAGACAAGCCGTTGATTTAAACGGGTTCGCCGAGAAAATATTCCCGAGAACCAGGAGTGTGGC
TATATTATTCGGTAGGGAAAGCACTGGTTTAACACGGGAAGAAATCAGTAAAGCCGATGTCCTGGTCACGATACCAGCAA
ACCCATCATACCCGGCACTTAATATTAGCCAGGCAGTAGCCATAGTGCTGTGGGAGCTCTGGAAGCAGAGGAGTATTACT
GCAACCAATATACCTCCTTTAGCCAGCAAGGAGACGCTGAGGCAATTACTTGATTTAACAGTGGAGATCTCAAAGCTAGT
TATGACTACTGAGGAGAAAATAACTAGATCAAGGATCCTATGGAGGAGAATACTCGGCAAAGCGCTTCTTACAGAAAAAG
AGGCTGCCTTATTAAGATACTGGCTTCAAAGAGTAAGAAGACATATTTCCTCTAATAAAACCTAA

Upstream 100 bases:

>100_bases
GTGGAGGAGTACTTGTCTAAGAAGGGGTTTAGTAGGGTGGCCTCTATAACTAAAAACATGTTTTTTGAAACACTATATAG
TGTTGGAGTAGTGAAGAGGA

Downstream 100 bases:

>100_bases
AAACACTACAGTTCTATAGCTAAGGATGAGACCTTGTACAATAGGTTTACGATAAAACCTGTATCGTAACAGGCGGTGCT
AGAGACATTGAAGCAACCAT

Product: SpoU rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLRIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASIEEALNYAARGKDFLLKARVTDSLDEAIKGVDMVAATSDEGY
SAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTREEISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSIT
ATNIPPLASKETLRQLLDLTVEISKLVMTTEEKITRSRILWRRILGKALLTEKEAALLRYWLQRVRRHISSNKT

Sequences:

>Translated_234_residues
MLRIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASIEEALNYAARGKDFLLKARVTDSLDEAIKGVDMVAATSDEGY
SAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTREEISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSIT
ATNIPPLASKETLRQLLDLTVEISKLVMTTEEKITRSRILWRRILGKALLTEKEAALLRYWLQRVRRHISSNKT
>Mature_234_residues
MLRIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASIEEALNYAARGKDFLLKARVTDSLDEAIKGVDMVAATSDEGY
SAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTREEISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSIT
ATNIPPLASKETLRQLLDLTVEISKLVMTTEEKITRSRILWRRILGKALLTEKEAALLRYWLQRVRRHISSNKT

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=180, Percent_Identity=33.8888888888889, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790865, Length=151, Percent_Identity=32.4503311258278, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26105; Mature: 26105

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASIEEALNYAARGKDFLLKARVTD
CEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEHHHH
SLDEAIKGVDMVAATSDEGYSAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTRE
HHHHHHHCCHHEEECCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCHH
EISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSITATNIPPLASKETLRQLLDLT
HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
VEISKLVMTTEEKITRSRILWRRILGKALLTEKEAALLRYWLQRVRRHISSNKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASIEEALNYAARGKDFLLKARVTD
CEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEHHHH
SLDEAIKGVDMVAATSDEGYSAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTRE
HHHHHHHCCHHEEECCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCHH
EISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSITATNIPPLASKETLRQLLDLT
HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
VEISKLVMTTEEKITRSRILWRRILGKALLTEKEAALLRYWLQRVRRHISSNKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]