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The map label for this gene is rpoH [H]

Identifier: 218884687

GI number: 218884687

Start: 1279310

End: 1279561

Strand: Reverse

Name: rpoH [H]

Synonym: DKAM_1376

Alternate gene names: 218884687

Gene position: 1279561-1279310 (Counterclockwise)

Preceding gene: 218884691

Following gene: 218884686

Centisome position: 93.73

GC content: 44.44

Gene sequence:

>252_bases
ATGAATAAGAAAATCAATATCCTGGAACACGAGTTAGTACCGAAGCATGAAACCCTAACACCAGAAGAGGCATATGAGGT
ATTGAAAAAGCTGGGCGTGGAGCCGTGGCAACTCCCGTGGATATCGATCAACGATCCAGTAATTAAAGCTATTGGTGCAA
GGCCAGGCGATATTGTTAGAATAATAAGGAAGAGCCCTACAGCCGGAGAGTTCGTTACCTATAGGTATGTGATAGTTGAT
GTCACGAGGTGA

Upstream 100 bases:

>100_bases
GAGTTGATATAATGGGCATTATCTTTAAAAATCGTTTAACGATTTCTAGAAATAGGTTTAGAAAAAAGTATAGAACATAT
ATAGCTTTGGGTGTTTACTT

Downstream 100 bases:

>100_bases
ATCCCTGATTGAATATTAGTAGTCAGGAAACACTGTCACCAGATGATTTATGGATTGTAATGAGAAAGTATTTCGAGGAA
AAGGGGCTTGTTAGACAGCA

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MNKKINILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGARPGDIVRIIRKSPTAGEFVTYRYVIVD
VTR

Sequences:

>Translated_83_residues
MNKKINILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGARPGDIVRIIRKSPTAGEFVTYRYVIVD
VTR
>Mature_83_residues
MNKKINILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGARPGDIVRIIRKSPTAGEFVTYRYVIVD
VTR

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI14589951, Length=73, Percent_Identity=49.3150684931507, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17507947, Length=74, Percent_Identity=48.6486486486487, Blast_Score=75, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6319630, Length=74, Percent_Identity=44.5945945945946, Blast_Score=70, Evalue=8e-14,
Organism=Drosophila melanogaster, GI19922004, Length=74, Percent_Identity=44.5945945945946, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020609
- InterPro:   IPR000783
- ProDom:   PD005155 [H]

Pfam domain/function: PF01191 RNA_pol_Rpb5_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 9534; Mature: 9534

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKINILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGARPGDIVR
CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHCCCCCCCHHHH
IIRKSPTAGEFVTYRYVIVDVTR
EECCCCCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MNKKINILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGARPGDIVR
CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHCCCCCCCHHHH
IIRKSPTAGEFVTYRYVIVDVTR
EECCCCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA