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The map label for this gene is rpl7ae

Identifier: 218884664

GI number: 218884664

Start: 1258473

End: 1258856

Strand: Reverse

Name: rpl7ae

Synonym: DKAM_1353

Alternate gene names: 218884664

Gene position: 1258856-1258473 (Counterclockwise)

Preceding gene: 218884665

Following gene: 218884661

Centisome position: 92.21

GC content: 45.31

Gene sequence:

>384_bases
ATGCCTAAGCCGTTTTATGTAAAGTTCGAGGTACCGCCTGAGCTAGCTGATAAAGTATACCAGGCAATATCAAAGGTAAG
AGAGACTGGTGGGAAAATCAAGAAGGGCACAAATGAAACAACAAAGGCTGTTGAAAGAGGACAAGCTAAGCTGGTTGTCA
TAGCTGAAGATGTTGACCCACCTGAAATAGTTGCCCACCTACCACTATTATGCGATGAGAAGAAGATACCATATGTCTAC
GTGCCAAGCAAACAGAAACTGGGCCAAGCAGCCGGTATTGAGGTATCTGCTGCCTCTGTCGCAGTAATAGATGTAGGCGG
AGCAAAGGACTTAATCGATGAAATAATTAAGAGTGTCCAGCAGATAAGGGCTCAGAGCGGCTGA

Upstream 100 bases:

>100_bases
AAGTAGTTTAAAAATTATTTAATGCCCGTAATTTATAAAGCCCTGACATTATTCTATATAGCTTGTAGACGACCACGAGT
TAAGGGAGGAGGATGAACAC

Downstream 100 bases:

>100_bases
TAAAGGTAATCATCCCTTCATTGTTTTTTATATGAACAATAATAAATCCTCCCAGGACGACGAGGTTCTTGAACGATTAG
TAAAACAGGTTTTCAAAACC

Product: 50S ribosomal protein L7Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MPKPFYVKFEVPPELADKVYQAISKVRETGGKIKKGTNETTKAVERGQAKLVVIAEDVDPPEIVAHLPLLCDEKKIPYVY
VPSKQKLGQAAGIEVSAASVAVIDVGGAKDLIDEIIKSVQQIRAQSG

Sequences:

>Translated_127_residues
MPKPFYVKFEVPPELADKVYQAISKVRETGGKIKKGTNETTKAVERGQAKLVVIAEDVDPPEIVAHLPLLCDEKKIPYVY
VPSKQKLGQAAGIEVSAASVAVIDVGGAKDLIDEIIKSVQQIRAQSG
>Mature_126_residues
PKPFYVKFEVPPELADKVYQAISKVRETGGKIKKGTNETTKAVERGQAKLVVIAEDVDPPEIVAHLPLLCDEKKIPYVYV
PSKQKLGQAAGIEVSAASVAVIDVGGAKDLIDEIIKSVQQIRAQSG

Specific function: Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs

COG id: COG1358

COG function: function code J; Ribosomal protein HS6-type (S12/L30/L7a)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L7Ae family

Homologues:

Organism=Homo sapiens, GI4826860, Length=73, Percent_Identity=49.3150684931507, Blast_Score=81, Evalue=3e-16,
Organism=Homo sapiens, GI51317376, Length=73, Percent_Identity=49.3150684931507, Blast_Score=81, Evalue=3e-16,
Organism=Homo sapiens, GI8923444, Length=108, Percent_Identity=34.2592592592593, Blast_Score=72, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17555988, Length=113, Percent_Identity=30.9734513274336, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32565833, Length=109, Percent_Identity=34.8623853211009, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32565827, Length=90, Percent_Identity=37.7777777777778, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17535189, Length=124, Percent_Identity=38.7096774193548, Blast_Score=62, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320809, Length=80, Percent_Identity=46.25, Blast_Score=83, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319993, Length=121, Percent_Identity=33.8842975206612, Blast_Score=73, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17864298, Length=91, Percent_Identity=43.956043956044, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21356151, Length=102, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL7A_DESK1 (B8D6E8)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002429046.1
- GeneID:   7171399
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1353
- HOGENOM:   HBG739027
- OMA:   GTNEATK
- ProtClustDB:   PRK04175
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00326
- InterPro:   IPR004038
- InterPro:   IPR018492
- InterPro:   IPR022481
- InterPro:   IPR004037
- InterPro:   IPR000948
- PRINTS:   PR00881
- PRINTS:   PR00884
- TIGRFAMs:   TIGR03677

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 13697; Mature: 13566

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS01082 RIBOSOMAL_L7AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPFYVKFEVPPELADKVYQAISKVRETGGKIKKGTNETTKAVERGQAKLVVIAEDVDP
CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCC
PEIVAHLPLLCDEKKIPYVYVPSKQKLGQAAGIEVSAASVAVIDVGGAKDLIDEIIKSVQ
HHHHHHCCCCCCCCCCCEEECCCHHHHCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHH
QIRAQSG
HHHHCCC
>Mature Secondary Structure 
PKPFYVKFEVPPELADKVYQAISKVRETGGKIKKGTNETTKAVERGQAKLVVIAEDVDP
CCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCC
PEIVAHLPLLCDEKKIPYVYVPSKQKLGQAAGIEVSAASVAVIDVGGAKDLIDEIIKSVQ
HHHHHHCCCCCCCCCCCEEECCCHHHHCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHH
QIRAQSG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA