Click here to switch to the map view.

The map label for this gene is rnp2 [H]

Identifier: 218884639

GI number: 218884639

Start: 1239837

End: 1240304

Strand: Reverse

Name: rnp2 [H]

Synonym: DKAM_1328

Alternate gene names: 218884639

Gene position: 1240304-1239837 (Counterclockwise)

Preceding gene: 218884640

Following gene: 218884638

Centisome position: 90.85

GC content: 42.52

Gene sequence:

>468_bases
ATGAATAGCTTTGAGGCAGTATTAGTTTTACTTACACTGGCTTCCTCGTTAGTCGCCCTCATATTATCTATTAGGAGCCA
CTATAGGGTTTCACGCCTCGTTGAAATAATTGGTGTGCTTGAAACGCGTGTCAGAAACCAGGGTGGGATGATTAAGCCTA
GGAAGCGCTACATAGCGTTTTCAATTGTATGCGATAAACCGGTCACCAGGGAGCAACTTGAAGACTCCTTTACGAAACTA
TACGCAGAGTACTTTGGTAAAGTCCTACTCCACAAGGCATCACCTCAATTCATATTCTTCATGGAAGACAAGCAAGTAGG
AGTACTTAGAGTCAGCCATCTCTACAAAGATCACGTGCTTGCAGTCCTCGGGATCCTCAAGCAAGTAAATAACTCTAAAT
GTATAGCCATACCATTGAAGACCTGTGGCTCATTAAAGAAATGCAGAAAGATCCTGGAGAAGTATTAA

Upstream 100 bases:

>100_bases
TATGATGTCCCAGAGCCCGTTGCCCTTGCATCGATTACTACGAGGCCATATCAAATCATCTCTGAGAAACTCCAGTTAAC
CAGGGGCAAGGTGGGTAGGG

Downstream 100 bases:

>100_bases
AGTATGAGGAGACCAGTCATCAACCATGTTGATAATAGAGAGGTGCGGGGGGTGGGATTTGAACCCACGCAGGCCTACGC
CAGCGGATCTTAAGTCCGCC

Product: Ribonuclease P protein component 2

Products: NA

Alternate protein names: RNase P component 2 [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MNSFEAVLVLLTLASSLVALILSIRSHYRVSRLVEIIGVLETRVRNQGGMIKPRKRYIAFSIVCDKPVTREQLEDSFTKL
YAEYFGKVLLHKASPQFIFFMEDKQVGVLRVSHLYKDHVLAVLGILKQVNNSKCIAIPLKTCGSLKKCRKILEKY

Sequences:

>Translated_155_residues
MNSFEAVLVLLTLASSLVALILSIRSHYRVSRLVEIIGVLETRVRNQGGMIKPRKRYIAFSIVCDKPVTREQLEDSFTKL
YAEYFGKVLLHKASPQFIFFMEDKQVGVLRVSHLYKDHVLAVLGILKQVNNSKCIAIPLKTCGSLKKCRKILEKY
>Mature_155_residues
MNSFEAVLVLLTLASSLVALILSIRSHYRVSRLVEIIGVLETRVRNQGGMIKPRKRYIAFSIVCDKPVTREQLEDSFTKL
YAEYFGKVLLHKASPQFIFFMEDKQVGVLRVSHLYKDHVLAVLGILKQVNNSKCIAIPLKTCGSLKKCRKILEKY

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends [H]

COG id: COG1369

COG function: function code J; RNase P/RNase MRP subunit POP5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002759 [H]

Pfam domain/function: PF01900 RNase_P_Rpp14 [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 17684; Mature: 17684

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFEAVLVLLTLASSLVALILSIRSHYRVSRLVEIIGVLETRVRNQGGMIKPRKRYIAF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEE
SIVCDKPVTREQLEDSFTKLYAEYFGKVLLHKASPQFIFFMEDKQVGVLRVSHLYKDHVL
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
AVLGILKQVNNSKCIAIPLKTCGSLKKCRKILEKY
HHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MNSFEAVLVLLTLASSLVALILSIRSHYRVSRLVEIIGVLETRVRNQGGMIKPRKRYIAF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEE
SIVCDKPVTREQLEDSFTKLYAEYFGKVLLHKASPQFIFFMEDKQVGVLRVSHLYKDHVL
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
AVLGILKQVNNSKCIAIPLKTCGSLKKCRKILEKY
HHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10701121; 11427726 [H]