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The map label for this gene is 218884605

Identifier: 218884605

GI number: 218884605

Start: 1211445

End: 1211672

Strand: Reverse

Name: 218884605

Synonym: DKAM_1294

Alternate gene names: NA

Gene position: 1211672-1211445 (Counterclockwise)

Preceding gene: 218884606

Following gene: 218884604

Centisome position: 88.75

GC content: 44.74

Gene sequence:

>228_bases
ATGAGCGAGACAGCGCATAAAATACTCGAAGAAAACCTTGGGAAACATGTCTTGATAAAAACCAAGGATAATATCCCGCT
TAGAGGAAAGCTTAGAAGCTTTGACCAGCATTTAAACATAGTGCTGGACGATGCTGAGGAAATACTGAGCAATGGCTCCA
CGAGAAAACTAGGCACGATCGTCATCAGGGGAGACACCGTTGTATTGATCTCACCCCTCGGAGAGTAA

Upstream 100 bases:

>100_bases
TCCAGTTGTAAGTGTAGATTTATAAGGTTATGCTTGATTAGGTCATTAAGTAGATCCAGTAATAATTGGTATGCAATGAT
AATTTATTAGGTGGGATCGT

Downstream 100 bases:

>100_bases
AGGCGAGACGGGTGAGCTAAATGGTTAAAGGCACAACCAGTATGGGTAAACACGGGAGGAGTAAAACACATATACGATGC
CGTAGGTGCGGGCGTCATAG

Product: Small nuclear ribonucleoprotein (snRNP)-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MSETAHKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTIVIRGDTVVLISPLGE

Sequences:

>Translated_75_residues
MSETAHKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTIVIRGDTVVLISPLGE
>Mature_74_residues
SETAHKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTIVIRGDTVVLISPLGE

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the snRNP Sm proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR001163
- InterPro:   IPR006649
- InterPro:   IPR022901 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8302; Mature: 8171

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETAHKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTI
CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCEEEEECHHHHHCCCCCCCEEEE
VIRGDTVVLISPLGE
EECCCEEEEEECCCC
>Mature Secondary Structure 
SETAHKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTI
CHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCEEEEECHHHHHCCCCCCCEEEE
VIRGDTVVLISPLGE
EECCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA