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The map label for this gene is 218884570

Identifier: 218884570

GI number: 218884570

Start: 1178326

End: 1178775

Strand: Reverse

Name: 218884570

Synonym: DKAM_1259

Alternate gene names: NA

Gene position: 1178775-1178326 (Counterclockwise)

Preceding gene: 218884572

Following gene: 218884569

Centisome position: 86.34

GC content: 42.44

Gene sequence:

>450_bases
ATGTCTGTTGTCGATGCTTCAAGAAGACTGGTCAGCGAGTTAGCCTCAATGATAGATAAAAAAATACGTGTCATATTAAG
CGATGGAAAATACTATGATGGAATATTAATAGGTTTCGACCACCCTGGATTAAACATATTATTGAGAAACGCTGTAGACG
ACAAGGGGAACAGGGTTCCTAGAGTCGTGATTAAAGGTGAGAGAATCTCGGAGATAGTTATCATGGAGGAACCATTATTC
AACCCCGAGGAATTCAAGGAATGGGTTCTTAGAGAAATGAAGATCCCAGAACATATGGTTAAAGTAATACCCGAGGCGAG
AGTAGTAGAGGTACAGGGACGCTACAGGGTTGGTGAGGACGGTGTACTTGGCTCCGGACCTATAGCTGAGACGCTTCACA
GCATTTACAAGAAATACATAGAGTACAGAAGGAAGATGATACAGGGATAG

Upstream 100 bases:

>100_bases
CAACTCTCACTAAACACCATGGCGTAGCACCCAGGTTTTTATTGTCTAAGACAAATGTAATTAAGGTATGTAATATGTTA
ATAAGCTTTGGTGAGCCTGA

Downstream 100 bases:

>100_bases
AAAGGTGTTTTTCGAGCCACGCGAATATGATTTAGCAGGTAGGATAACCAGGTTAACTACTAGGCATGGAAGTATTGAAA
CCCCCTATCTTTTTCCAGTC

Product: Small nuclear ribonucleoprotein (snRNP)-like protein

Products: NA

Alternate protein names: Small Nuclear Ribonucleoprotein Homolog; Sm Ribonucleoprotein Core-Like Protein; Small Nuclear Ribonucleoprotein

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSVVDASRRLVSELASMIDKKIRVILSDGKYYDGILIGFDHPGLNILLRNAVDDKGNRVPRVVIKGERISEIVIMEEPLF
NPEEFKEWVLREMKIPEHMVKVIPEARVVEVQGRYRVGEDGVLGSGPIAETLHSIYKKYIEYRRKMIQG

Sequences:

>Translated_149_residues
MSVVDASRRLVSELASMIDKKIRVILSDGKYYDGILIGFDHPGLNILLRNAVDDKGNRVPRVVIKGERISEIVIMEEPLF
NPEEFKEWVLREMKIPEHMVKVIPEARVVEVQGRYRVGEDGVLGSGPIAETLHSIYKKYIEYRRKMIQG
>Mature_148_residues
SVVDASRRLVSELASMIDKKIRVILSDGKYYDGILIGFDHPGLNILLRNAVDDKGNRVPRVVIKGERISEIVIMEEPLFN
PEEFKEWVLREMKIPEHMVKVIPEARVVEVQGRYRVGEDGVLGSGPIAETLHSIYKKYIEYRRKMIQG

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17092; Mature: 16961

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVDASRRLVSELASMIDKKIRVILSDGKYYDGILIGFDHPGLNILLRNAVDDKGNRVP
CCCCHHHHHHHHHHHHHHHHHHEEEECCCCEECCEEEEECCCCCEEEEECCCCCCCCCCC
RVVIKGERISEIVIMEEPLFNPEEFKEWVLREMKIPEHMVKVIPEARVVEVQGRYRVGED
EEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCEEECCC
GVLGSGPIAETLHSIYKKYIEYRRKMIQG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVVDASRRLVSELASMIDKKIRVILSDGKYYDGILIGFDHPGLNILLRNAVDDKGNRVP
CCCHHHHHHHHHHHHHHHHHHEEEECCCCEECCEEEEECCCCCEEEEECCCCCCCCCCC
RVVIKGERISEIVIMEEPLFNPEEFKEWVLREMKIPEHMVKVIPEARVVEVQGRYRVGED
EEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCEEECCC
GVLGSGPIAETLHSIYKKYIEYRRKMIQG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA